Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00174 ATGGCTTTCTTTCGACCCCATCTTCCTCCCATTCATTTTTCTTCATTAACCCTCTTCCATTTCCTCCTCATCATGCCATTGATCCCTCCCGCCGCCATGTCCTTGCCGGAAGTTTTGTCCCCCCGCCTCGTTGATAAGGGCCCTGTGATTCCGGTCACCAATCTCGTCAAGTTCCTTGAGCGTCTTCAGGTTGCAGCTCTCAACTCGTTTGGGAAATTAGATTTTGATCTTAAATACTACGTCGATTTGTCTTTGAAGTTCGATTTGAATTCTACTGAAACAGCTTTTGATGCCCTTGAACGATCCTCCAATGGCTCTGTTCCCGTTGAGAATTTGAAGGCCTTCATTATAGACTATTTCGATAGTGCTGGAACCGACTTGGTTTACTCTGAGCCGGTTGATTTTTTCCCTCAGCCTGTTGGGTTCTTGCCCAAAGTTGAGAATGCGGAGGTTAGAGCTTGGGCTTTGGATATTCATAATTTTTGGAAGAATCTTAGCCGTAGAGTCTCCGATGATCTCATTCATCGGCCGGATACCCACACTCTGCTCCCGTTGCCGGAGCCTGTTGTCATTCCGGGAGCCAGATTTCGGGAAGTTTACTATTGGGATTCCTATTGGATTATCAGAGGTTTGTTAGCTAGTAAAATGTATGATACTGCAAAGGGAATTGTTATTAATCTCATATCAATGATTGATGAGTTTGGCCATGTTCTGAATGGTGCCAGAGCTTATTACACAAACAGAAGTCAGCCTCCCCTTTTGAGTTCCATGGTTTATGACATATACCTTAGGACAGGAGATTTAGAGTTTGTGAGCAATGCACTCCCAGCTTTAATCAAAGAGCATAAGTTTTGGAATTCAGGATTCCATTCAATTACTGTCCAGAATGCTCCTGGTGGAAATGGGAATCACTCTTTATCTAGATACTATGCAATGTGGAACGAGCCGAGGCCGGAATCGTCACTGCTGGATGTGAAACTTGCCTCAAAGTTAGTTAATAACAATGAAAAACAGCATCTGTACCGGGAAATCGCATCGGCAGCCGAATCTGGTTGGGATTTCAGTACAAGATGGATGAGGGATCCAACAGACTTATCAACATTGGCAACAACTTCAATCCTGCCAGTTGATCTCAATGTATTTATACTCAAGATGGAACTTGACATTTCCAATTTGGCAAGAGCTGTTGGAGATTACTGCACGGCAGAACACTTTTTTGAGGCTTCTCTAGTTAGAAAGAAGACAATCAACTCTATTTTCTGGAATTCAGAGAAGGGACAATGGCTTGATTACTGGCTTGATAATGGATCATACAAGGGTGCTCATACATGGGATGCTCGAAACCAGAACCAGAACGTATACGCTTCAAACTTCATTCCGTTGTGGATCGAATCGTTCTACTCTGGTTTGTAG 1413 43.52 MAFFRPHLPPIHFSSLTLFHFLLIMPLIPPAAMSLPEVLSPRLVDKGPVIPVTNLVKFLERLQVAALNSFGKLDFDLKYYVDLSLKFDLNSTETAFDALERSSNGSVPVENLKAFIIDYFDSAGTDLVYSEPVDFFPQPVGFLPKVENAEVRAWALDIHNFWKNLSRRVSDDLIHRPDTHTLLPLPEPVVIPGARFREVYYWDSYWIIRGLLASKMYDTAKGIVINLISMIDEFGHVLNGARAYYTNRSQPPLLSSMVYDIYLRTGDLEFVSNALPALIKEHKFWNSGFHSITVQNAPGGNGNHSLSRYYAMWNEPRPESSLLDVKLASKLVNNNEKQHLYREIASAAESGWDFSTRWMRDPTDLSTLATTSILPVDLNVFILKMELDISNLARAVGDYCTAEHFFEASLVRKKTINSIFWNSEKGQWLDYWLDNGSYKGAHTWDARNQNQNVYASNFIPLWIESFYSGL 470
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1818710 1823054 - Lsi09G001740.1 Lsi09g00174 669787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00174 470 SUPERFAMILY Six-hairpin glycosidases 70 463 IPR008928 GO:0005975
Lsi09g00174 470 Gene3D - 57 468 IPR012341 GO:0005975
Lsi09g00174 470 PANTHER TREHALASE 44 468 - -
Lsi09g00174 470 Pfam Trehalase 73 467 IPR001661 GO:0004555|GO:0005991
Lsi09g00174 470 PANTHER TREHALASE 44 468 IPR001661 GO:0004555|GO:0005991
Lsi09g00174 470 PRINTS Glycosyl hydrolase family 37 signature 306 323 IPR001661 GO:0004555|GO:0005991
Lsi09g00174 470 PRINTS Glycosyl hydrolase family 37 signature 416 432 IPR001661 GO:0004555|GO:0005991
Lsi09g00174 470 PRINTS Glycosyl hydrolase family 37 signature 373 390 IPR001661 GO:0004555|GO:0005991
Lsi09g00174 470 PRINTS Glycosyl hydrolase family 37 signature 234 252 IPR001661 GO:0004555|GO:0005991
Lsi09g00174 470 PRINTS Glycosyl hydrolase family 37 signature 341 358 IPR001661 GO:0004555|GO:0005991
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g00173 Lsi-Chr9:1814876 Lsi09g00174 Lsi-Chr9:1818710 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00174 K01194 - csv:101208719 857.055