Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00174 ATGGCTTTCTTTCGACCCCATCTTCCTCCCATTCATTTTTCTTCATTAACCCTCTTCCATTTCCTCCTCATCATGCCATTGATCCCTCCCGCCGCCATGTCCTTGCCGGAAGTTTTGTCCCCCCGCCTCGTTGATAAGGGCCCTGTGATTCCGGTCACCAATCTCGTCAAGTTCCTTGAGCGTCTTCAGGTTGCAGCTCTCAACTCGTTTGGGAAATTAGATTTTGATCTTAAATACTACGTCGATTTGTCTTTGAAGTTCGATTTGAATTCTACTGAAACAGCTTTTGATGCCCTTGAACGATCCTCCAATGGCTCTGTTCCCGTTGAGAATTTGAAGGCCTTCATTATAGACTATTTCGATAGTGCTGGAACCGACTTGGTTTACTCTGAGCCGGTTGATTTTTTCCCTCAGCCTGTTGGGTTCTTGCCCAAAGTTGAGAATGCGGAGGTTAGAGCTTGGGCTTTGGATATTCATAATTTTTGGAAGAATCTTAGCCGTAGAGTCTCCGATGATCTCATTCATCGGCCGGATACCCACACTCTGCTCCCGTTGCCGGAGCCTGTTGTCATTCCGGGAGCCAGATTTCGGGAAGTTTACTATTGGGATTCCTATTGGATTATCAGAGGTTTGTTAGCTAGTAAAATGTATGATACTGCAAAGGGAATTGTTATTAATCTCATATCAATGATTGATGAGTTTGGCCATGTTCTGAATGGTGCCAGAGCTTATTACACAAACAGAAGTCAGCCTCCCCTTTTGAGTTCCATGGTTTATGACATATACCTTAGGACAGGAGATTTAGAGTTTGTGAGCAATGCACTCCCAGCTTTAATCAAAGAGCATAAGTTTTGGAATTCAGGATTCCATTCAATTACTGTCCAGAATGCTCCTGGTGGAAATGGGAATCACTCTTTATCTAGATACTATGCAATGTGGAACGAGCCGAGGCCGGAATCGTCACTGCTGGATGTGAAACTTGCCTCAAAGTTAGTTAATAACAATGAAAAACAGCATCTGTACCGGGAAATCGCATCGGCAGCCGAATCTGGTTGGGATTTCAGTACAAGATGGATGAGGGATCCAACAGACTTATCAACATTGGCAACAACTTCAATCCTGCCAGTTGATCTCAATGTATTTATACTCAAGATGGAACTTGACATTTCCAATTTGGCAAGAGCTGTTGGAGATTACTGCACGGCAGAACACTTTTTTGAGGCTTCTCTAGTTAGAAAGAAGACAATCAACTCTATTTTCTGGAATTCAGAGAAGGGACAATGGCTTGATTACTGGCTTGATAATGGATCATACAAGGGTGCTCATACATGGGATGCTCGAAACCAGAACCAGAACGTATACGCTTCAAACTTCATTCCGTTGTGGATCGAATCGTTCTACTCTGGTTTGTAG 1413 43.52 MAFFRPHLPPIHFSSLTLFHFLLIMPLIPPAAMSLPEVLSPRLVDKGPVIPVTNLVKFLERLQVAALNSFGKLDFDLKYYVDLSLKFDLNSTETAFDALERSSNGSVPVENLKAFIIDYFDSAGTDLVYSEPVDFFPQPVGFLPKVENAEVRAWALDIHNFWKNLSRRVSDDLIHRPDTHTLLPLPEPVVIPGARFREVYYWDSYWIIRGLLASKMYDTAKGIVINLISMIDEFGHVLNGARAYYTNRSQPPLLSSMVYDIYLRTGDLEFVSNALPALIKEHKFWNSGFHSITVQNAPGGNGNHSLSRYYAMWNEPRPESSLLDVKLASKLVNNNEKQHLYREIASAAESGWDFSTRWMRDPTDLSTLATTSILPVDLNVFILKMELDISNLARAVGDYCTAEHFFEASLVRKKTINSIFWNSEKGQWLDYWLDNGSYKGAHTWDARNQNQNVYASNFIPLWIESFYSGL 470
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1818710 1823054 - Lsi09G001740.1 Lsi09g00174 669787

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00174 470 SUPERFAMILY Six-hairpin glycosidases 70 463 IPR008928 GO:0005975
Lsi09g00174 470 Gene3D - 57 468 IPR012341 GO:0005975
Lsi09g00174 470 PANTHER TREHALASE 44 468 - -
Lsi09g00174 470 Pfam Trehalase 73 467 IPR001661 GO:0004555|GO:0005991
Lsi09g00174 470 PANTHER TREHALASE 44 468 IPR001661 GO:0004555|GO:0005991
Lsi09g00174 470 PRINTS Glycosyl hydrolase family 37 signature 306 323 IPR001661 GO:0004555|GO:0005991
Lsi09g00174 470 PRINTS Glycosyl hydrolase family 37 signature 416 432 IPR001661 GO:0004555|GO:0005991
Lsi09g00174 470 PRINTS Glycosyl hydrolase family 37 signature 373 390 IPR001661 GO:0004555|GO:0005991
Lsi09g00174 470 PRINTS Glycosyl hydrolase family 37 signature 234 252 IPR001661 GO:0004555|GO:0005991
Lsi09g00174 470 PRINTS Glycosyl hydrolase family 37 signature 341 358 IPR001661 GO:0004555|GO:0005991
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00174 K01194 TREH, treA, treF; alpha,alpha-trehalase [EC:3.2.1.28] - csv:101208719 857.055
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g00173 Lsi-Chr9:1814876 Lsi09g00174 Lsi-Chr9:1818710 0 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi09g00174 . 45 468 Trehalose Biosynthesis Gene Families AT4G24040 57.2 1.2e-140 497.3
Lsi01g00224 . 1 846 Trehalose Biosynthesis Gene Families AT1G06410 75.4 0.0e+00 1348.6
Lsi07g01179 . 1 844 Trehalose Biosynthesis Gene Families AT1G06410 66.5 0.0e+00 1152.1
Lsi11g01716 . 4 644 Trehalose Biosynthesis Gene Families AT1G06410 77.2 2.8e-310 1061.2
Lsi06g01540 . 1 837 Trehalose Biosynthesis Gene Families AT1G06410 60.0 1.7e-304 1042.0
Lsi11g01715 . 5 183 Trehalose Biosynthesis Gene Families AT1G06410 80.4 1.9e-77 287.7
Lsi04g00531 . 1 182 Trehalose Biosynthesis Gene Families AT1G06410 62.6 1.1e-61 235.3
Lsi04g01978 . 85 696 Trehalose Biosynthesis Gene Families AT1G16980 66.2 1.0e-248 856.3
Lsi02g00848 . 94 714 Trehalose Biosynthesis Gene Families AT1G16980 61.4 9.9e-231 796.6
Lsi06g01540 . 1 852 Trehalose Biosynthesis Gene Families AT1G23870 66.8 0.0e+00 1215.7
Lsi07g01179 . 1 843 Trehalose Biosynthesis Gene Families AT1G23870 62.6 0.0e+00 1108.2
Lsi01g00224 . 1 847 Trehalose Biosynthesis Gene Families AT1G23870 61.2 0.0e+00 1098.2
Lsi11g01716 . 5 645 Trehalose Biosynthesis Gene Families AT1G23870 61.3 1.3e-251 866.3
Lsi04g00531 . 3 188 Trehalose Biosynthesis Gene Families AT1G23870 73.0 2.2e-73 274.2
Lsi11g01715 . 3 184 Trehalose Biosynthesis Gene Families AT1G23870 59.9 8.5e-57 219.2
Lsi06g01540 . 1 852 Trehalose Biosynthesis Gene Families AT1G60140 68.3 0.0e+00 1232.6
Lsi07g01179 . 1 848 Trehalose Biosynthesis Gene Families AT1G60140 59.8 0.0e+00 1079.7
Lsi01g00224 . 1 851 Trehalose Biosynthesis Gene Families AT1G60140 60.6 0.0e+00 1078.5
Lsi11g01716 . 6 642 Trehalose Biosynthesis Gene Families AT1G60140 60.1 2.6e-239 825.5
Lsi04g00531 . 3 194 Trehalose Biosynthesis Gene Families AT1G60140 69.8 7.6e-74 275.8
Lsi11g01715 . 3 187 Trehalose Biosynthesis Gene Families AT1G60140 61.1 3.7e-60 230.3
Lsi07g01179 . 1 847 Trehalose Biosynthesis Gene Families AT1G68020 71.7 0.0e+00 1270.4
Lsi01g00224 . 1 847 Trehalose Biosynthesis Gene Families AT1G68020 64.3 0.0e+00 1161.4
Lsi06g01540 . 1 835 Trehalose Biosynthesis Gene Families AT1G68020 62.7 0.0e+00 1095.9
Lsi11g01716 . 6 647 Trehalose Biosynthesis Gene Families AT1G68020 63.1 2.1e-257 885.6
Lsi11g01715 . 9 186 Trehalose Biosynthesis Gene Families AT1G68020 65.2 1.0e-62 238.8
Lsi04g00531 . 8 180 Trehalose Biosynthesis Gene Families AT1G68020 66.5 1.0e-62 238.8
Lsi06g01540 . 1 852 Trehalose Biosynthesis Gene Families AT1G70290 63.4 0.0e+00 1105.5
Lsi01g00224 . 1 850 Trehalose Biosynthesis Gene Families AT1G70290 57.1 7.3e-292 1000.0
Lsi07g01179 . 1 853 Trehalose Biosynthesis Gene Families AT1G70290 56.5 3.9e-285 977.6
Lsi11g01716 . 6 645 Trehalose Biosynthesis Gene Families AT1G70290 57.8 1.0e-221 766.9
Lsi04g00531 . 3 182 Trehalose Biosynthesis Gene Families AT1G70290 72.8 6.8e-72 269.2
Lsi11g01715 . 3 193 Trehalose Biosynthesis Gene Families AT1G70290 59.4 9.5e-58 222.2
Lsi04g01978 . 1 922 Trehalose Biosynthesis Gene Families AT1G78580 79.4 0.0e+00 1479.2
Lsi02g00848 . 8 950 Trehalose Biosynthesis Gene Families AT1G78580 71.0 0.0e+00 1322.4
Lsi06g01540 . 10 837 Trehalose Biosynthesis Gene Families AT2G18700 60.2 1.4e-301 1032.3
Lsi01g00224 . 1 843 Trehalose Biosynthesis Gene Families AT2G18700 58.9 1.0e-299 1026.2
Lsi07g01179 . 1 844 Trehalose Biosynthesis Gene Families AT2G18700 58.4 9.3e-298 1019.6
Lsi11g01716 . 5 645 Trehalose Biosynthesis Gene Families AT2G18700 57.1 2.2e-230 795.8
Lsi04g00531 . 3 182 Trehalose Biosynthesis Gene Families AT2G18700 65.2 1.1e-61 235.3
Lsi11g01715 . 3 183 Trehalose Biosynthesis Gene Families AT2G18700 61.5 2.6e-53 207.6
Lsi07g01179 . 1 839 Trehalose Biosynthesis Gene Families AT4G17770 79.3 0.0e+00 1379.8
Lsi01g00224 . 1 839 Trehalose Biosynthesis Gene Families AT4G17770 67.0 0.0e+00 1182.5
Lsi06g01540 . 1 838 Trehalose Biosynthesis Gene Families AT4G17770 62.6 0.0e+00 1107.0
Lsi11g01716 . 4 642 Trehalose Biosynthesis Gene Families AT4G17770 63.7 2.9e-259 891.7
Lsi11g01715 . 3 191 Trehalose Biosynthesis Gene Families AT4G17770 60.3 2.1e-63 241.1
Lsi04g00531 . 7 182 Trehalose Biosynthesis Gene Families AT4G17770 61.9 3.0e-62 237.3
Lsi04g01978 . 93 925 Trehalose Biosynthesis Gene Families AT4G27550 62.7 1.2e-304 1042.3
Lsi02g00848 . 98 944 Trehalose Biosynthesis Gene Families AT4G27550 57.4 1.4e-276 949.1
Lsi04g01978 . 1 922 Trehalose Biosynthesis Gene Families AT1G78580 79.4 0.0e+00 1479.2
Lsi02g00848 . 8 950 Trehalose Biosynthesis Gene Families AT1G78580 71.0 0.0e+00 1322.4
Lsi04g01978 . 85 696 Trehalose Biosynthesis Gene Families AT1G16980 66.2 1.0e-248 856.3
Lsi02g00848 . 94 714 Trehalose Biosynthesis Gene Families AT1G16980 61.4 9.9e-231 796.6
Lsi04g01978 . 83 621 Trehalose Biosynthesis Gene Families AT1G17000 62.3 1.0e-194 677.2
Lsi02g00848 . 99 629 Trehalose Biosynthesis Gene Families AT1G17000 57.9 2.7e-179 625.9
Lsi04g01978 . 93 925 Trehalose Biosynthesis Gene Families AT4G27550 62.7 1.2e-304 1042.3
Lsi02g00848 . 98 944 Trehalose Biosynthesis Gene Families AT4G27550 57.4 1.4e-276 949.1
Lsi07g01179 . 1 839 Trehalose Biosynthesis Gene Families AT4G17770 79.3 0.0e+00 1379.8
Lsi01g00224 . 1 839 Trehalose Biosynthesis Gene Families AT4G17770 67.0 0.0e+00 1182.5
Lsi06g01540 . 1 838 Trehalose Biosynthesis Gene Families AT4G17770 62.6 0.0e+00 1107.0
Lsi11g01716 . 4 642 Trehalose Biosynthesis Gene Families AT4G17770 63.7 2.9e-259 891.7
Lsi11g01715 . 3 191 Trehalose Biosynthesis Gene Families AT4G17770 60.3 2.1e-63 241.1
Lsi04g00531 . 7 182 Trehalose Biosynthesis Gene Families AT4G17770 61.9 3.0e-62 237.3
Lsi07g01179 . 1 847 Trehalose Biosynthesis Gene Families AT1G68020 71.7 0.0e+00 1270.4
Lsi01g00224 . 1 847 Trehalose Biosynthesis Gene Families AT1G68020 64.3 0.0e+00 1161.4
Lsi06g01540 . 1 835 Trehalose Biosynthesis Gene Families AT1G68020 62.7 0.0e+00 1095.9
Lsi11g01716 . 6 647 Trehalose Biosynthesis Gene Families AT1G68020 63.1 2.1e-257 885.6
Lsi11g01715 . 9 186 Trehalose Biosynthesis Gene Families AT1G68020 65.2 1.0e-62 238.8
Lsi04g00531 . 8 180 Trehalose Biosynthesis Gene Families AT1G68020 66.5 1.0e-62 238.8
Lsi01g00224 . 1 846 Trehalose Biosynthesis Gene Families AT1G06410 75.4 0.0e+00 1348.6
Lsi07g01179 . 1 844 Trehalose Biosynthesis Gene Families AT1G06410 66.5 0.0e+00 1152.1
Lsi11g01716 . 4 644 Trehalose Biosynthesis Gene Families AT1G06410 77.2 2.8e-310 1061.2
Lsi06g01540 . 1 837 Trehalose Biosynthesis Gene Families AT1G06410 60.0 1.7e-304 1042.0
Lsi11g01715 . 5 183 Trehalose Biosynthesis Gene Families AT1G06410 80.4 1.9e-77 287.7
Lsi04g00531 . 1 182 Trehalose Biosynthesis Gene Families AT1G06410 62.6 1.1e-61 235.3
Lsi06g01540 . 1 852 Trehalose Biosynthesis Gene Families AT1G70290 63.4 0.0e+00 1105.5
Lsi01g00224 . 1 850 Trehalose Biosynthesis Gene Families AT1G70290 57.1 7.3e-292 1000.0
Lsi07g01179 . 1 853 Trehalose Biosynthesis Gene Families AT1G70290 56.5 3.9e-285 977.6
Lsi11g01716 . 6 645 Trehalose Biosynthesis Gene Families AT1G70290 57.8 1.0e-221 766.9
Lsi04g00531 . 3 182 Trehalose Biosynthesis Gene Families AT1G70290 72.8 6.8e-72 269.2
Lsi11g01715 . 3 193 Trehalose Biosynthesis Gene Families AT1G70290 59.4 9.5e-58 222.2
Lsi06g01540 . 1 852 Trehalose Biosynthesis Gene Families AT1G23870 66.8 0.0e+00 1215.7
Lsi07g01179 . 1 843 Trehalose Biosynthesis Gene Families AT1G23870 62.6 0.0e+00 1108.2
Lsi01g00224 . 1 847 Trehalose Biosynthesis Gene Families AT1G23870 61.2 0.0e+00 1098.2
Lsi11g01716 . 5 645 Trehalose Biosynthesis Gene Families AT1G23870 61.3 1.3e-251 866.3
Lsi04g00531 . 3 188 Trehalose Biosynthesis Gene Families AT1G23870 73.0 2.2e-73 274.2
Lsi11g01715 . 3 184 Trehalose Biosynthesis Gene Families AT1G23870 59.9 8.5e-57 219.2
Lsi06g01540 . 1 852 Trehalose Biosynthesis Gene Families AT1G60140 68.3 0.0e+00 1232.6
Lsi07g01179 . 1 848 Trehalose Biosynthesis Gene Families AT1G60140 59.8 0.0e+00 1079.7
Lsi01g00224 . 1 851 Trehalose Biosynthesis Gene Families AT1G60140 60.6 0.0e+00 1078.5
Lsi11g01716 . 6 642 Trehalose Biosynthesis Gene Families AT1G60140 60.1 2.6e-239 825.5
Lsi04g00531 . 3 194 Trehalose Biosynthesis Gene Families AT1G60140 69.8 7.6e-74 275.8
Lsi11g01715 . 3 187 Trehalose Biosynthesis Gene Families AT1G60140 61.1 3.7e-60 230.3
Lsi06g01540 . 10 837 Trehalose Biosynthesis Gene Families AT2G18700 60.2 1.4e-301 1032.3
Lsi01g00224 . 1 843 Trehalose Biosynthesis Gene Families AT2G18700 58.9 1.0e-299 1026.2
Lsi07g01179 . 1 844 Trehalose Biosynthesis Gene Families AT2G18700 58.4 9.3e-298 1019.6
Lsi11g01716 . 5 645 Trehalose Biosynthesis Gene Families AT2G18700 57.1 2.2e-230 795.8
Lsi04g00531 . 3 182 Trehalose Biosynthesis Gene Families AT2G18700 65.2 1.1e-61 235.3
Lsi11g01715 . 3 183 Trehalose Biosynthesis Gene Families AT2G18700 61.5 2.6e-53 207.6
Lsi09g00174 . 45 468 Trehalose Biosynthesis Gene Families AT4G24040 57.2 1.2e-140 497.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006557 1 3 1 1 1 1 2 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 2 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00174 Lsi_Chr09 FPKM 0.0 0.0 0.399767 0.0 1.764431 0.694416 0.836685 2.12767 2.070527 2.163736