Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00186 ATGAAGTTCAATTGGAAGCTACCGTTTCCTTTCAAACGCAACCATGTACTGATTTTGAAGCTTGTTCTTCCTATTTTCTTACTGGGTATTGCTTTTCGTTTCCTCTTTGCCGGTTCCGGTGACGTTCCGGCGATTTTAGAAACCCCTATGACAGAGAGGATGGCGGCGCCGACGATTTTGGAAACCCCTCCAACTGAGAAGAATGATGTTCCTTTGATTTTGGAAACTCCTTTCTCTAAGAAGACTGAGGATTTGCAGGCACCAGAAACTCCGGAGGTTGAAAATCAGAAATCAGTTGAAGGGAAGTGTAATTTTTTTGTTGGAGAGTGGATTCCAAATCCATCAGGTCCTGTGTACAATAATGAGAGCTGCCCCCATATTGAAGCTCATCAAAATTGTATGAAGAATGGGCGGCCAGATACCGAATACCTATACTGGAGATGGAAGCCACGGGATTGCGAACTACCGAAGTTCGATTCACAAAGATTTCTTGAGATGATGAGGGACAAAACATGGGCGTTGATAGGAGATTCGATATCTCGAAACCATGTTCAATCATTGCTGTGCATGCTATCAACGGTGGAAGTAGCAGTTCATATCTACCATGATGAAGGATACAAGTCTAGAAAATGGAGGTTTCCATCATACAACTTCACTATTTCAGTTGTTTGGTCACCTTTCCTTGCAGAAGCTGCTATATTTGAAGATTATAATGGTGTGTCTACATCTGAAGTTGAGCTGCATCTCGACAAACTCGATAAGAAATGGACAGATGAGTTCCATCAAATGGACTACATGATCATTTCTAGTGGCAAATGGTTTGTGAAACCTGCAATATACTATGAGAATAACAAAGTGCTGGGCTGCCATTATTGTCCAAAAAAGAATTATACAGAGCTAGGTATTGAATTTGCCTATCGGAGATCGCTTCGGTCTGCATTAAACTTTATTATAGCATCCAAGCATAAGGGTATGATATTTATGAGAACATCAACACCTGACCACTTCGAAAATGGGGAGTGGTCTAACGGAGGAACATGCGATCAAAAGGCACCGATAAAAGAAGGTGAGATTGAATTGAAAGAACTGACCAAGATTCTGCGCATCGTCGAGTTAGAGGAGTTTAAGAAGGCAGAAGCAAAAGCGTCTCAAAATGGGATGAATCTTAAGCTTCTTGACTTGACCCAGCTTTCATTGTTGAGGCCTGATGGGCATCCAGGTCCATACAGAGAGTTCCAACCATTTGCAAATGACAAAAATGCAAAAGTGCAGAAAGATTGCTTGCATTGGTGCCTACCCGGACCGATTGACTCGTGGAATGACGTGATTATGGAAATGGTGTTGAACGGATAG 1353 42.13 MKFNWKLPFPFKRNHVLILKLVLPIFLLGIAFRFLFAGSGDVPAILETPMTERMAAPTILETPPTEKNDVPLILETPFSKKTEDLQAPETPEVENQKSVEGKCNFFVGEWIPNPSGPVYNNESCPHIEAHQNCMKNGRPDTEYLYWRWKPRDCELPKFDSQRFLEMMRDKTWALIGDSISRNHVQSLLCMLSTVEVAVHIYHDEGYKSRKWRFPSYNFTISVVWSPFLAEAAIFEDYNGVSTSEVELHLDKLDKKWTDEFHQMDYMIISSGKWFVKPAIYYENNKVLGCHYCPKKNYTELGIEFAYRRSLRSALNFIIASKHKGMIFMRTSTPDHFENGEWSNGGTCDQKAPIKEGEIELKELTKILRIVELEEFKKAEAKASQNGMNLKLLDLTQLSLLRPDGHPGPYREFQPFANDKNAKVQKDCLHWCLPGPIDSWNDVIMEMVLNG 450
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1935097 1938804 - Lsi09G001860.1 Lsi09g00186 669799

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00186 450 Pfam PMR5 N terminal Domain 102 154 IPR025846 -
Lsi09g00186 450 Pfam GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p 155 446 IPR026057 GO:0016740
Lsi09g00186 450 Coils Coil 353 373 - -
Lsi09g00186 450 PANTHER PROTEIN TRICHOME BIREFRINGENCE-LIKE 24 9 449 - -
Lsi09g00186 450 PANTHER PROTEIN TRICHOME BIREFRINGENCE-LIKE 9-RELATED 9 449 IPR029962 GO:0016413
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00186 - - - csv:101211100 846.269
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01420 Lsi-Chr3:25155111 Lsi09g00186 Lsi-Chr9:1935097 5.52E-88 dispersed
Lsi04g00196 Lsi-Chr4:2068678 Lsi09g00186 Lsi-Chr9:1935097 3.86E-73 dispersed
Lsi05g00392 Lsi-Chr5:4977536 Lsi09g00186 Lsi-Chr9:1935097 1.25E-103 dispersed
Lsi09g00186 Lsi-Chr9:1935097 Lsi03g01747 Lsi-Chr3:28867508 4.40E-55 dispersed
Lsi09g00186 Lsi-Chr9:1935097 Lsi04g00521 Lsi-Chr4:4823887 7.50E-108 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g111 . . . . . . Bma07g01681 . . . Cma02g01395 Cma15g01270 Car02g01174 Car15g01145 . . Cpe05g00379 . . . . . . . . . . . . . . Cone8ag0253 . . . . Csa05g00214 Chy09g01285 . . . Bda07g00465 Bda09g00018 . Bpe11g00641 . . . Cmo02g01430 Cmo15g01340 . . . . . Cpe13g00118 Bhi12g00160 . . Lac11g2012 Hepe06g1489 . . Cla01g00198 Cam01g0204 Cec01g0198 Cco01g0203 Clacu01g0200 Cmu01g0196 Cre09g2311 Lsi09g00186 . . Cme09g01829
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004213 2 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 5 4 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00186 Lsi_Chr09 FPKM 1.283716 1.214704 0.562414 0.360482 1.082874 0.519371 0.671779 0.0 0.0 0.0