Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00187 ATGGAAGAAATGAGTGAGGATATGACGCTTTTGGATGCGACAGAGGATGCACATGTCCAAAATAAAGTCAGGCAAGATGCTCAGGAGAATGAGTATTCGCTGAAACCTGAAAATACCAACATAGTTGAACCACAAGAAATGGTTATACCCATTGACGGTGGCTATTCACAGGATTATCCTCATGAATTTACTGACATTTTAGAGGGTAAGAATCTGAATAGGTGTAAAAACAATGTTAAATTATCTGATCAACCAGAGTGCAGTCCTCATTGTATGGATGATGCTGGCGTAATGGTCGAAGAGCTAACTGTGAAAAATCACAATGGTTCCAATTTAGCAATTATTGGTCCATCAAACAATAGAGCACGACTGCTTTCTAGGCATAGTCAGTGGCAACATCTTTACCAGCTGGGAAGTGGTTCAGGAAGTGGGAGTTCACGTATTGATACTTCTTACAAGAACAGTGGTCAGGCAGTAACCCCTGGCTTGGAGAACGGTGGGTATACATCTTTTCCCGAGGCTTTTGCTGGAAGAGCGAATCGTAATGATTGTGGAGAAGAATTGGAAGAAATAAAGGCTACTGACAATAAGGGTGGTGATGCTCATGGCAGCATTCGGACCAAGATTCTATCAAAATCGGGGTTTCCTGAATTTTTTGTTAAAAGTACCTTGAAAGGCAAGGGGATCATTCGTAGAGGTGTACAACTGGAGGGCTTCAATGTTGAACATAGAAACCCTAAGAATGCAAGGCTTGCTGGGGGTATTACATTGGCATCAAACTCATCATTACAAGATGACGTTAAGCCTCTAATTCCTACTTTGTATAAGAAATCTGAGCATAAACACCGGGGTTCTTCTTTAGATGGCATTAGTCTGAGAGAATGGCTTAAAGTTCCCAACCAAAAAGTAGTTGAGCTGGTGGATCGTTCTCATGCTCGGGGGGTTTTGTTGCGTGACTTACGTCCATCTTCTTTCAGGATATTGACGACAAATCAGGTGAGGTACTTTGGAACTTTTATTCAAGGGAAAACTTCAGAAAGCCTATTGGTTAAAGACAGTCAGTGTTCAGATAGCCATCTGACTCGGAAAAGGCCATTAGAGCAAGGGAACTTTCCATCCTTTGGTATATCTCCAAAAAAACAAAAAGATGTACAGAATATGAGTCTTATGGCCCGACACTCTCATTTTCCTTTAAAACCTGGTGCCAATCTTGAAACTGCGAATACTAGGGATTGCAATAAGAATGATTTGGAGAATTACAATGAACATTTTGCGGAACAGGGGGGTTGGAACAAGCCTGCTGGCCTTCGTGCATATGATTCTGCCCGGACTTCAATAAGTGACCTATTGGAAGAGACATGGTATGTAAGTCCAGAGGAACTTATTACAGGATGCTGCTCAGCTAAATCAAATATATTCTCTCTTGGTGTTCTTCTCTTTGAGTTACTTGGAAAGTTTGAATCAGATGGTGCACTTGCTGCAGCGATGTCAAATTTGCGTGAGAGGATTCTTCCTCCTAACTTTCTAGCCGATAACTTGAAGGAAGTTGGTTTTTGTCTTTGGCTACTTCATCCTGAACCTGCATCTCGTCCGACAGTAAGGGAAATTTTAGAATCAGAACTAATTAATGGAATGGCAAATGTTCCGGCAGCAGAGCTTTCACCGTCTATTGATGAGGAAGATGCTGAATCAGAGTTATTATTGCAGTTTCTCACATCATTGAATGAGCAAAAGCAGGAACATGCCTCAAAGTTGGTGGAAGACATACGGTATTTAGAATCAGATATTGAAGAAGTCAATAAAAGGCACAGTTCAGCCAATCCCTTGGATAAATCTGGCTTGTCTACTGTATATAGAATATCACATAACAATGAAGAGAGAATAGCAAAAAATATAAGTCAGCTTGAAAGTGCTTATTTTTCCATGAGATCAAAAGTAAATCCCTCTGAGAGTGATTCAGCAGTTCGGACAGATAGCGATTTACTGAAAACTCGTGAAAACTGCTATCTACCACAAAAGGATGATGAGAGGAGTCACGGTGATCGTCTAGGTGCCTTTTTTGATGGGTTTTGCAAGTATTCTCGTTATAGCAAGTTTGAAGTACGTGGAGTACTGAGAAATGGCGATTTTAACAGTTCCTCGAATGTAATCTGTTCCTTGAGATTTGATCGGGATGAGGACTATTTTGCTGCTGCTGGAGTGTCGAAGAAAATAAGGATTTTTGAGTTTAACTCACTCTTTAGTGACTCGGTAGATATTCACTATCCCGCAGTTGAAATGTTTAATAGATCAAAGCTTAGCTGTATTTGCTGGAATAGCTACATCAAGAACTATCTGGCTTCAACTGATTATGATGGTGTTGTTAAGTGGTTTGTCTCTCAACGATTTTTAGCCAGTAGTTTATTCTTAGTTTTAACTTCTGAAAATGTTTATACTGATCAATATGTGCTATCAAATGTAGACTTCTGCTACACCTTATGGGATGCAACTGTAGGTCAAGAGGTTTCTCAATTCAATGAACACCATAAGAGGGCGTGGTCTGTTGACTTTTCACAAGTGCATCCTACAAAATTGGCCAGTGGAAGTGATGATTGTGCTAAGAACTGTTTGGGCACAATTAGGAACATAGCAAACGTATGCTGCGTTCAGTTCTCTGCTCACTCAACTCATTTGCTGGCTTTTGGGTCTGCCGATTACAGAACTTATTGCTTTGATCTTCGAAATACTAAAGCCCCTTGGTGTGTGTTGGGTGGCCATGAGAAAGCTGTAAGCTATGTGAAGTTCTTGGACTCAGGGACCCTTGTTTCTGCATCCACAGACAACACGTTGAAGCTATGGGATCTTAATAGAACCAATCCTACTGGCTTGTCTACCAATGCTTGCAGTTTAACTCTCAGTGGCCACACTAATGAAAAGAATTTCGTGGGTCTATCAGTTTCCAATGGCTACATTGCTTGTGGTTCAGAAACAAATGAAGTATATGCTTACCATAGATCTCTGCCCATGCCAATGACTTCCTATAAGTTTGGTTCTATCGACCCTATTTCTGGAAAAGAGACCGAGGACGACAATGGACAGTTTGTTTCGAGTGTATGCTGGAGAGGAAAATCCGACATGGTTATTGCAGCCAACTCAAGTGGGTGTATAAAAGTACTGGAAATGTTCATTAAATGCATATGCGAATATTATTTAGGTTGCGATGATTCAAACAAAATCTACTACAATATAGATACTAGAAATCGTATTACTCAATTAAATTTAAGAGGGCTAGAAAATGGTAACGGGATATCTCTGTTCGTCTTTAATACTCGAGGTCGTGAAGTTGTTCGTGAAATTGTTCGTGAAGGCATTTGTGAAGGTGTTCGTGAAGTCACTCGTGTTCTTGTTTCTAGGATCCCTGAG 3402 40.53 MEEMSEDMTLLDATEDAHVQNKVRQDAQENEYSLKPENTNIVEPQEMVIPIDGGYSQDYPHEFTDILEGKNLNRCKNNVKLSDQPECSPHCMDDAGVMVEELTVKNHNGSNLAIIGPSNNRARLLSRHSQWQHLYQLGSGSGSGSSRIDTSYKNSGQAVTPGLENGGYTSFPEAFAGRANRNDCGEELEEIKATDNKGGDAHGSIRTKILSKSGFPEFFVKSTLKGKGIIRRGVQLEGFNVEHRNPKNARLAGGITLASNSSLQDDVKPLIPTLYKKSEHKHRGSSLDGISLREWLKVPNQKVVELVDRSHARGVLLRDLRPSSFRILTTNQVRYFGTFIQGKTSESLLVKDSQCSDSHLTRKRPLEQGNFPSFGISPKKQKDVQNMSLMARHSHFPLKPGANLETANTRDCNKNDLENYNEHFAEQGGWNKPAGLRAYDSARTSISDLLEETWYVSPEELITGCCSAKSNIFSLGVLLFELLGKFESDGALAAAMSNLRERILPPNFLADNLKEVGFCLWLLHPEPASRPTVREILESELINGMANVPAAELSPSIDEEDAESELLLQFLTSLNEQKQEHASKLVEDIRYLESDIEEVNKRHSSANPLDKSGLSTVYRISHNNEERIAKNISQLESAYFSMRSKVNPSESDSAVRTDSDLLKTRENCYLPQKDDERSHGDRLGAFFDGFCKYSRYSKFEVRGVLRNGDFNSSSNVICSLRFDRDEDYFAAAGVSKKIRIFEFNSLFSDSVDIHYPAVEMFNRSKLSCICWNSYIKNYLASTDYDGVVKWFVSQRFLASSLFLVLTSENVYTDQYVLSNVDFCYTLWDATVGQEVSQFNEHHKRAWSVDFSQVHPTKLASGSDDCAKNCLGTIRNIANVCCVQFSAHSTHLLAFGSADYRTYCFDLRNTKAPWCVLGGHEKAVSYVKFLDSGTLVSASTDNTLKLWDLNRTNPTGLSTNACSLTLSGHTNEKNFVGLSVSNGYIACGSETNEVYAYHRSLPMPMTSYKFGSIDPISGKETEDDNGQFVSSVCWRGKSDMVIAANSSGCIKVLEMFIKCICEYYLGCDDSNKIYYNIDTRNRITQLNLRGLENGNGISLFVFNTRGREVVREIVREGICEGVREVTRVLVSRIPE 1134
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1948413 1957806 + Lsi09G001870.1 Lsi09g00187 669800

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00187 1134 Gene3D - 686 1056 IPR015943 GO:0005515
Lsi09g00187 1134 ProSiteProfiles Trp-Asp (WD) repeats profile. 916 956 IPR001680 GO:0005515
Lsi09g00187 1134 PANTHER PROTEIN SPA1-RELATED 2 825 1054 - -
Lsi09g00187 1134 PANTHER PROTEIN SPA1-RELATED 2 4 790 - -
Lsi09g00187 1134 Gene3D Transferase(Phosphotransferase) domain 1 293 549 - -
Lsi09g00187 1134 SMART WD40_4 909 947 IPR001680 GO:0005515
Lsi09g00187 1134 SMART WD40_4 698 742 IPR001680 GO:0005515
Lsi09g00187 1134 SMART WD40_4 866 905 IPR001680 GO:0005515
Lsi09g00187 1134 SMART WD40_4 831 865 IPR001680 GO:0005515
Lsi09g00187 1134 SMART WD40_4 958 997 IPR001680 GO:0005515
Lsi09g00187 1134 SMART WD40_4 754 792 IPR001680 GO:0005515
Lsi09g00187 1134 SMART WD40_4 1014 1053 IPR001680 GO:0005515
Lsi09g00187 1134 Pfam WD domain, G-beta repeat 915 947 IPR001680 GO:0005515
Lsi09g00187 1134 ProSiteProfiles Protein kinase domain profile. 131 542 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi09g00187 1134 Coils Coil 582 602 - -
Lsi09g00187 1134 SUPERFAMILY WD40 repeat-like 715 1054 IPR036322 GO:0005515
Lsi09g00187 1134 SUPERFAMILY Protein kinase-like (PK-like) 453 561 IPR011009 -
Lsi09g00187 1134 PANTHER PROTEIN SPA1-RELATED 2 825 1054 IPR044630 GO:0009640
Lsi09g00187 1134 PANTHER PROTEIN SPA1-RELATED 2 4 790 IPR044630 GO:0009640
Lsi09g00187 1134 ProSitePatterns Trp-Asp (WD) repeats signature. 934 948 IPR019775 -
Lsi09g00187 1134 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 916 949 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00187 K16240 SPA1; protein suppressor of PHYA-105 1 - csv:101211350 1865.12
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02073 Lsi-Chr4:27874013 Lsi09g00187 Lsi-Chr9:1948413 2.83E-163 dispersed
Lsi09g00187 Lsi-Chr9:1948413 Lsi10g01568 Lsi-Chr10:20107869 5.23E-81 dispersed
Lsi09g00187 Lsi-Chr9:1948413 Lsi11g01130 Lsi-Chr11:19742629 1.70E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g105 . . . . . . . Bma14g00626 . . Cma02g01396 Cma15g01269 Car02g01175 Car15g01144 . . Cpe05g00378 . . . . . . . . . . . . . . Cone8ag0255 Cone12ag0261 . . . Csa05g00216 Chy09g01283 . . . Bda07g00466 . . Bpe11g00642 . . . Cmo02g01431 Cmo15g01339 . . . . . Cpe13g00119 Bhi12g00161 . . Lac11g2015 Hepe06g1490 . Lcy12g1581 Cla01g00199 Cam01g0205 Cec01g0199 Cco01g0204 Clacu01g0201 Cmu01g0197 Cre09g2310 Lsi09g00187 . . Cme09g01828
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005844 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 2 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00187 Lsi_Chr09 FPKM 0.345872 0.358652 0.056721 0.0 0.516679 0.508634 0.446643 0.0 0.0 0.0