Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00188 ATGGAACAATTCCGGCGCATTGGAGAGGTATTGGGAAGTTTAAAGGCTCTTATGGTGTTGCAAGATGATATTCAATTCAACCAGCGTCAATGTTGTTTACTGCATGATATGTTTAGTTTGGCTTTTGATACAATTGCTGGAGAGATTAGGGATAATCTTAAGCTTGAAGAGAAGAACACCAAGTGGAAAGCTCTTGAACAGCCTTTGAGGGAATTGCATAGAGTTTTTAAAGAAGGGGAACTTTACATTAAGCAATGCATAGATTCCAAAGACTGGTGGGCTAAAGTAATCAGCTTCCATCAGAACAAAGACTGCATTGAATTCCATGTCCACAACTTGCTTTCCTGCTTTTCTGCTGTCATTGAAGCGATTGAGACGGCTGGAGAGATATCGGGGCTCGATCAGGACGAGATGCAGAAGAGAAGGCTTGTACTTATGAGGAAATATGATATGGAATGGAATGACCTGAAACTGTTCCATTGGAGATTTGGGAAACAGTATTTGGTTCCTCGAGAGATACGTAACCGGATGCAAAGCATTTCGAGAGAAGATCGATGGCTGCTAGTTGAAGCACTCAAGGAGAAGATAAGTTCACCTGAAACAGCTGGTTCAAAGAATGAGCAGCGGCTTGGTGAGTTGTTGATAAAGAAATTAAACAACTCAGAACTGTCTACTGCGAAGCTTTTCCCCAGTTCGATTTTATTTGGAACAAAGGATTATCAGGTGAGGAGACGGTTGGATGGAGGGCAGTATAAGGAAGTCCAATGGTTTGGGGAGAACTTTGGTCTGAAACAGTTCACAGCGGAAACTGAACAAACTGATTCTGAGGTTCCAATTCTTCTATCACTTTCCCATCCTAATTTATTGCAATACCTCTGTGGGTTTTTGGATGAGGAGAAGAAAGAGTACTTTCTTATAACAGAGTTGATGTCCAAGGATCTTTCTTCCTACATGAAGGATAATAATGGAGCCAGGAGGAGAATCTTGTTTCCTCTCCATGTTACAGTTGATATCATGCTTCAAATTGCTAGAGGCATGGAATATCTTCACTCCCAAATGATCTATCATGGAGATTTAAACCCTTCCAATGTATTTATGAAGCCAAGGAACTCTTCAGAAGGCTGTTATCTTGTAAAAGTCGCCGGTTTCGGTTTATCATCCATCAAGAATTCACCTCCCAGAAACTCAGCAAACCAAATAGAAAGCAACCCTTTTATCTGGCATGCCCCAGAAGTGATGGCAGAGCAAGAACAACAAGGTCCAGGAACTGTTTCTTTTTTCAGGAAGACAGAGAAAGCAGATGTTTACAGTTTTGGGATGCTTTGTTTTGAGCTTTTGACTGGAAAGGTTCCATTTGAAGATGGCCATTTACAAGGGGAGAAGATGAGCCGCAATATCCGAGCAGGAGAGAGACCCCTCTTCCCATTTCCAACTCCCAAATATTTGGTGAGCCTTACCAAAAGATGCTGGCATTCTGACCCTTCTCAGAGGTTATCATTCTCTTCCATTTGTCGAATCCTTCGCCAGGTGAAGAAATTCCTTGCTATGAACCCTGAAACCAATCAGCCTGAACTGCAAATGCCTACCGTCGATTACTGTGACGTTGAAGCAGGAGTTGCAAGGAAGTTCTCCTCAGATGGGATTGGTGATTTGTGTTTAGTTTCACAGATTCCATTCCAAATGTTTGCTTATAGACTTGCAGAGAAGGAGAAGACAAGTCCAAGCAAAATCAAGACTTGGGATTCTGCAAGTGATGTGGTTTCCATTAGCAAGGATGATTGTGCATCCATTTATAGAGATGATACAGCTTCTGTAATAGAAGATCCATTCACCATCCCTGCAAGTGACACTAGATCCCTTTATTCTGATATGAGATCTGTCTATTCTGAAGCTCCACCCAAGAAAATGCCAACTACAAAGAAACTTCCAGACACAAAGATTAAAAAAGGCACAGGGATCCTAGAAACAAGAACACGAGTGACTTCACGAACACCTTCACAAATGCCTTCACGAACAATTTCACGAACAACTTCACGACCTCGAGTATTAAAGACGAACAGAGATATCCCGTTACCATTTTCTAGCCCTCTGAGTAAGGGAAGAAGGAAACCGAATGGTCATGTCTCGGACTCGGAGATTCACTAG 2145 42.05 MEQFRRIGEVLGSLKALMVLQDDIQFNQRQCCLLHDMFSLAFDTIAGEIRDNLKLEEKNTKWKALEQPLRELHRVFKEGELYIKQCIDSKDWWAKVISFHQNKDCIEFHVHNLLSCFSAVIEAIETAGEISGLDQDEMQKRRLVLMRKYDMEWNDLKLFHWRFGKQYLVPREIRNRMQSISREDRWLLVEALKEKISSPETAGSKNEQRLGELLIKKLNNSELSTAKLFPSSILFGTKDYQVRRRLDGGQYKEVQWFGENFGLKQFTAETEQTDSEVPILLSLSHPNLLQYLCGFLDEEKKEYFLITELMSKDLSSYMKDNNGARRRILFPLHVTVDIMLQIARGMEYLHSQMIYHGDLNPSNVFMKPRNSSEGCYLVKVAGFGLSSIKNSPPRNSANQIESNPFIWHAPEVMAEQEQQGPGTVSFFRKTEKADVYSFGMLCFELLTGKVPFEDGHLQGEKMSRNIRAGERPLFPFPTPKYLVSLTKRCWHSDPSQRLSFSSICRILRQVKKFLAMNPETNQPELQMPTVDYCDVEAGVARKFSSDGIGDLCLVSQIPFQMFAYRLAEKEKTSPSKIKTWDSASDVVSISKDDCASIYRDDTASVIEDPFTIPASDTRSLYSDMRSVYSEAPPKKMPTTKKLPDTKIKKGTGILETRTRVTSRTPSQMPSRTISRTTSRPRVLKTNRDIPLPFSSPLSKGRRKPNGHVSDSEIH 714
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1957590 1959844 - Lsi09G001880.1 Lsi09g00188 669801

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00188 714 PANTHER BNAA09G12080D PROTEIN 1 655 - -
Lsi09g00188 714 PANTHER SERINE-THREONINE PROTEIN KINASE 1 655 - -
Lsi09g00188 714 Gene3D Transferase(Phosphotransferase) domain 1 219 531 - -
Lsi09g00188 714 Pfam Protein tyrosine and serine/threonine kinase 269 506 IPR001245 GO:0004672|GO:0006468
Lsi09g00188 714 MobiDBLite consensus disorder prediction 657 714 - -
Lsi09g00188 714 MobiDBLite consensus disorder prediction 657 680 - -
Lsi09g00188 714 ProSiteProfiles Protein kinase domain profile. 240 514 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi09g00188 714 SUPERFAMILY Protein kinase-like (PK-like) 232 529 IPR011009 -
Lsi09g00188 714 Pfam Protein of unknown function (DUF1221) 21 236 IPR010632 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00188 - - - csv:101209943 1328.15
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g00188 Lsi-Chr9:1957590 Lsi02g00366 Lsi-Chr2:3140797 6.09E-25 dispersed
Lsi05g02087 Lsi-Chr5:27721179 Lsi09g00188 Lsi-Chr9:1957590 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g104 . . . . . . . Bma14g00625 . . Cma02g01397 Cma15g01268 Car02g01176 Car15g01143 . . Cpe05g00377 . . . . . . . . . . . . . . Cone8ag0256 . Cone6ag0836 . . Csa05g00217 Chy09g01282 . . Blo19g00360 . . . Bpe11g00643 . . . Cmo02g01432 Cmo15g01338 Cma06g01032 . . . . Cpe13g00120 Bhi12g00163 . . Lac11g2016 Hepe06g1491 . . Cla01g00200 Cam01g0206 Cec01g0200 Cco01g0205 Clacu01g0202 Cmu01g0198 Cre09g2309 Lsi09g00188 . . Cme09g01827
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007279 0 3 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83873 PF07714 PK_Tyr_Ser-Thr 1.50E-37 CL0016 Lsi PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00188 Lsi_Chr09 FPKM 10.313811 10.856129 0.117689 0.0 5.03845 6.06926 5.733258 0.087741 0.0 0.083547