Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00192 ATGAATATGGATTTGGACTCTGTTTTTTCCTTCCCCATCAAATACACTGAGCATCTCAACCATGTTAAGCTCACTTCAATGCCGGAAATCAGGCCTAGAGTTGTTCGGATTTCCGTCACCGACGGTGACGCTACTGATTCCTCCAGCGACGATGAGTCCGAAATGTTTGGTCGCCAGAGAGTCAAGAAATTTGTGAATGAAATTACAATCGAGCCATCTTGCTCTGGCGAAGGGAACGGAATCTGGGGTCTGAATAGATCGGCGAGGACTGGCCTGAGACGCTCCACGGGAAAATGTGGGGTGCCGTCTAGGAATCGTCGGTCGGCGAAGGTTACTACTGGGAAGAAGTTCCGTGGTGTGAGACAGAGGCCATGGGGAAAATGGGCGGCGGAAATCAGAGACCCACTCCGCCGTGTACGCCTCTGGTTGGGAACTTACGACACGGCGGAGGAAGCCGCTATGGTTTACGACAACGCGGCCATTCAACTCCGGGGACCCGATGCACTCACCAATTTCACAACTCAACAACCGAAATCGTTTGCCGGAAAATGCTCTGGCTACAACTCTGGCGAGGAGTCCAACAACAACATTTGCTCTCCGACCTCCGTCCTCCGATGTCCTTCTCCACCCATCGAAGAAGCCCAATCGCAACTCCCCGGCGAGCCGGACAACTCATGCGTGTCGGAAAATTTCTCGTCGGAGTTCTCCGACTTCTCGAGCTGCTCCGATACCTTCATTCCCGATGACATTTTCGCCTTCGAAACTTCGATTCCAACCTTATTCGACGAGATGGGCCTGCAAAATCAAACCAACTTCTTCAGCAACGACGGTTTCTTCAACGGTGTGTTTCACAGTCCCGTCGAAGAAGTCGGATTCGGGTTCGAATACCCGACTCCACCACCCGACGACTTCTTTCAAGACTTCAGCGATGTGTTCGGGTCGGATCCTCTCGTCGCACTCTGA 963 52.54 MNMDLDSVFSFPIKYTEHLNHVKLTSMPEIRPRVVRISVTDGDATDSSSDDESEMFGRQRVKKFVNEITIEPSCSGEGNGIWGLNRSARTGLRRSTGKCGVPSRNRRSAKVTTGKKFRGVRQRPWGKWAAEIRDPLRRVRLWLGTYDTAEEAAMVYDNAAIQLRGPDALTNFTTQQPKSFAGKCSGYNSGEESNNNICSPTSVLRCPSPPIEEAQSQLPGEPDNSCVSENFSSEFSDFSSCSDTFIPDDIFAFETSIPTLFDEMGLQNQTNFFSNDGFFNGVFHSPVEEVGFGFEYPTPPPDDFFQDFSDVFGSDPLVAL 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1984864 1985826 - Lsi09G001920.1 Lsi09g00192 669805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00192 320 MobiDBLite consensus disorder prediction 93 116 - -
Lsi09g00192 320 Pfam AP2 domain 116 165 IPR001471 GO:0003700|GO:0006355
Lsi09g00192 320 Gene3D AP2/ERF domain 115 175 IPR036955 GO:0003700|GO:0006355
Lsi09g00192 320 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF5-RELATED 10 316 - -
Lsi09g00192 320 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 10 316 - -
Lsi09g00192 320 SUPERFAMILY DNA-binding domain 116 174 IPR016177 GO:0003677
Lsi09g00192 320 PRINTS Ethylene responsive element binding protein signature 117 128 IPR001471 GO:0003700|GO:0006355
Lsi09g00192 320 PRINTS Ethylene responsive element binding protein signature 139 155 IPR001471 GO:0003700|GO:0006355
Lsi09g00192 320 SMART rav1_2 116 179 IPR001471 GO:0003700|GO:0006355
Lsi09g00192 320 ProSiteProfiles AP2/ERF domain profile. 116 173 IPR001471 GO:0003700|GO:0006355
Lsi09g00192 320 CDD AP2 115 172 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00304 Lsi-Chr8:8049544 Lsi09g00192 Lsi-Chr9:1984864 4.73E-32 dispersed
Lsi09g00042 Lsi-Chr9:380446 Lsi09g00192 Lsi-Chr9:1984864 7.92E-47 dispersed
Lsi09g00192 Lsi-Chr9:1984864 Lsi10g01489 Lsi-Chr10:19061529 2.46E-33 dispersed
Lsi07g00697 Lsi-Chr7:7508907 Lsi09g00192 Lsi-Chr9:1984864 1.87E-91 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25862 PF00847 AP2 1.30E-13 CL0081 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00192 - - csv:101210444 554.673