Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00193 ATGGCTTCGAAGCGGATCTTGAAAGAGCTCAAGGATCTCCAGAAGGATCCTCCTACGTCTTGCAGTGCAGGCCCAGTAGCTGAAGACATGTTCCATTGGCAAGCAACAATTATGGGCCCTCCTGACAGTCCTTATGCAGGAGGAGTGTTTCTTGTCAACATTCATTTCCCTCCAGATTATCCATTTAAACCACCCAAGGTTGCATTCAGAACAAAGGTCTTTCATCCCAATATCAACAGCAACGGTAGCATATGCCTCGACATACTTAAGGAACAGTGGAGTCCTGCACTAACCATTTCCAAGGTGTTACTTTCGATCTGCTCGCTGCTAACGGACCCTAATCCTGATGATCCTTTGGTGCCAGAGATTGCGCACATGTATAAGACTGACAGAAGCAAGTACGAGGCAACCGCCAGAAGCTGGACCCAGAAGTATGCTATGGGTTAG 447 47.65 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVNIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYEATARSWTQKYAMG 148
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2006813 2013420 - Lsi09G001930.1 Lsi09g00193 669806

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00193 148 PANTHER BNAA01G32320D PROTEIN 3 145 - -
Lsi09g00193 148 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 74 89 IPR023313 -
Lsi09g00193 148 SUPERFAMILY UBC-like 2 147 IPR016135 -
Lsi09g00193 148 Pfam Ubiquitin-conjugating enzyme 5 141 IPR000608 -
Lsi09g00193 148 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 147 IPR000608 -
Lsi09g00193 148 Gene3D Ubiquitin Conjugating Enzyme 1 148 IPR016135 -
Lsi09g00193 148 SMART ubc_7 4 147 - -
Lsi09g00193 148 CDD UBCc 3 142 IPR000608 -
Lsi09g00193 148 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 3 145 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00193 K06689 UBE2D, UBC4, UBC5; ubiquitin-conjugating enzyme E2 D [EC:2.3.2.23] - csv:101210687 313.538
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01627 Lsi-Chr1:14640705 Lsi09g00193 Lsi-Chr9:2006813 6.73E-85 dispersed
Lsi02g01936 Lsi-Chr2:25282028 Lsi09g00193 Lsi-Chr9:2006813 1.71E-96 dispersed
Lsi05g02092 Lsi-Chr5:27749881 Lsi09g00193 Lsi-Chr9:2006813 9.15E-92 dispersed
Lsi06g01668 Lsi-Chr6:26926387 Lsi09g00193 Lsi-Chr9:2006813 5.27E-37 dispersed
Lsi07g00235 Lsi-Chr7:2612435 Lsi09g00193 Lsi-Chr9:2006813 7.58E-22 dispersed
Lsi09g00193 Lsi-Chr9:2006813 Lsi10g01489 Lsi-Chr10:19061529 1.55E-88 dispersed
Lsi09g00241 Lsi-Chr9:2537992 Lsi09g00193 Lsi-Chr9:2006813 9.92E-27 dispersed
Lsi09g00193 Lsi-Chr9:2006813 Lsi05g01167 Lsi-Chr5:19606720 3.16E-108 transposed
Lsi09g00193 Lsi-Chr9:2006813 Lsi09g00043 Lsi-Chr9:389415 6.60E-108 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g99 Blo02g01137 . . Bda08g00487 Bpe05g00677 . . . . . . . Car02g01180 . . . Cpe05g00618 . . . . . . . . . . . . . . . Cone12ag0264 Cone6ag0831 Cone9ag0830 . Csa05g00222 Chy09g01278 . . . Bda07g01917 . . . Bma05g00850 . . Cmo02g01437 . . . . . . Cpe13g00124 Bhi12g00166 . . Lac11g2026 Hepe06g1497 . Lcy12g1590 . . . . . . . Lsi09g00193 . . Cme09g01822
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000093 10 14 5 8 10 8 7 6 4 8 8 6 9 8 9 10 7 11 12 3 8 8 10 7 4 8 8 13 15 7 251
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00193 Lsi_Chr09 FPKM 4.880309 4.213838 9.072604 8.593206 24.764471 26.198286 21.44313 0.118161 0.166896 0.140262