Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00194 ATGGAAGCTCTGTGGATTTTCAGCTCCGTTTTGGTTATGGGGTTGGTTTTTTCGCCTACTAATGGCGACCCAGTTGAAGACAAGCGAGCTTTGCTTGATTTTGTCAATAATCTCCCTCACTCTCGTTCTCTTAACTGGAATGCAGCTTCTCCGGTTTGTCATTACTGGACTGGTATAACTTGCAGTCAAGATGACTCTCGTGTTATAGCCGTTCGATTGCCCGGAGTTGGCTTTCACGGCCCGATTCCAGCGAATACACTTAGCCGGCTGTCGGCGCTGCAAATATTGAGTCTCAGATCCAATCGTATAACTGGGGATTTCCCTTTGGATTTCTCGAACCTTAGTAACTTGTCTTATCTTTATCTTCAGTTCAACAACTTCTCTGGGCCATTGCCTTCCAATTTCTCTGTCTGGAAGAATCTCACCTTTGTGAATCTCTCTAATAATGGCTTCAATGGCCGTATTCCACGTTCGCTTTCTGATCTGACAGCACTCACGGGTTTGAATCTGGCAAACAATTCTCTCTCAGGAGAAATACCTGACCTCCAAATCCCCAAATTACAGGTTCTGGATTTTTCTAACAACAATCTGAGTGGGAGTGTGCCTAAATCTTTACAGAGATTTCCAAGGTCTGTATTTGTAGGCAATGACATATCCTTTGGAAGTTCTTTATCAAACAATCCTCCCGTACCCCCGCCATTGCCCGTGTCGAATGAAAAGCCAAAGAATGCTGGGGGGCTTGGAGAAGCAGCAGTGTTAGGAATTATAATTGCTGGTGGTATTTTGGGGCTTCTGGCATTTGGCTTTCTAATCCTTGTTTGCTTCTCAAGAAGGAAGAGGGAAGATGAATATTCTGGGGATCTTCAGAAAGGCAGAATGTCGCCGGAAAAAGTGATATCAAGGACTCAAGATGCAAACAACAGATTGGTTTTCTTTGAGGGGTGCCATTATGCATTTGACTTGGAGGATTTGTTGAGGGCTTCTGCTGAGGTCTTGGGGAAGGGAACTTTTGGTACTGCATATAAAGCAATTCTAGAGGATGCCACCACGGTTGTTGTTAAGAGGTTGAAGGATGTAAGCGCTGGGAAACGCGATTTCGAGCAGCAAATGGAGATTGTTGGCAGTATCAGGCATGAGAATGTGGTTGAATTGAAGGCTTACTACTATTCCAAAGACGAGAAGCTGATGGTTTATGATTTCTTTGGTCAGGGAAGCGTCTCGGCCATGTTACACGGTAAACGCGGAGAGGAAAAAACCCCGCTAGATTGGGACACTCGACTGAGAATTGCAGTTGGTGCAGCACGAGGAATCGCCCGCGTCCATGCCGAAAATGGCGGGAAACTCATCCATGGAAATGTGAAATCCTCAAACATCTTTCTGAACTCTCAACAGTATGGATGTGTCTCTGATCTTGGACTAGCAACCATAACAAGCTCACTATCTCCACCTATATCCCGCGCTGCTGGTTACCGAGCCCCAGAAGTGACAGACACTCGCAAGGCTACACAAGCTTCAGACGTTTTCAGCTTCGGCGTCGTGCTCCTCGAGCTTCTAACTGGAAAGTCTCCAATTCATGCAACAGGCGGCGAAGAGATTGTCCATTTGGTTAGATGGGTTCATTCAGTTGTCCGAGAGGAATGGACAGCTGAGGTATTTGATGTAGAGCTGATGAGATATCCCAACATAGAGGAAGAAATGGTTGAGATGTTACAAATAGCCTTATCATGTGTGGCCAGGATACCTGATCAGAGACCGAAAATGGCTGAAATTGTGAAGATGATCGAAAGCGTTCGACCAATGGAAGCCGAGAATCGACCTTCTTCCACGAACCGATCTGAAAGTTCGATGCCACCACAAGTTGTTGAGACAGAAAATTCAACCTCTCAGTGA 1890 45.77 MEALWIFSSVLVMGLVFSPTNGDPVEDKRALLDFVNNLPHSRSLNWNAASPVCHYWTGITCSQDDSRVIAVRLPGVGFHGPIPANTLSRLSALQILSLRSNRITGDFPLDFSNLSNLSYLYLQFNNFSGPLPSNFSVWKNLTFVNLSNNGFNGRIPRSLSDLTALTGLNLANNSLSGEIPDLQIPKLQVLDFSNNNLSGSVPKSLQRFPRSVFVGNDISFGSSLSNNPPVPPPLPVSNEKPKNAGGLGEAAVLGIIIAGGILGLLAFGFLILVCFSRRKREDEYSGDLQKGRMSPEKVISRTQDANNRLVFFEGCHYAFDLEDLLRASAEVLGKGTFGTAYKAILEDATTVVVKRLKDVSAGKRDFEQQMEIVGSIRHENVVELKAYYYSKDEKLMVYDFFGQGSVSAMLHGKRGEEKTPLDWDTRLRIAVGAARGIARVHAENGGKLIHGNVKSSNIFLNSQQYGCVSDLGLATITSSLSPPISRAAGYRAPEVTDTRKATQASDVFSFGVVLLELLTGKSPIHATGGEEIVHLVRWVHSVVREEWTAEVFDVELMRYPNIEEEMVEMLQIALSCVARIPDQRPKMAEIVKMIESVRPMEAENRPSSTNRSESSMPPQVVETENSTSQ 629
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2018164 2021922 - Lsi09G001940.1 Lsi09g00194 669807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00194 629 Gene3D Ribonuclease Inhibitor 25 230 IPR032675 -
Lsi09g00194 629 ProSiteProfiles Protein kinase domain profile. 326 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi09g00194 629 MobiDBLite consensus disorder prediction 596 629 - -
Lsi09g00194 629 MobiDBLite consensus disorder prediction 602 629 - -
Lsi09g00194 629 PANTHER PROTEIN, PUTATIVE-RELATED 21 608 - -
Lsi09g00194 629 Gene3D Phosphorylase Kinase; domain 1 292 400 - -
Lsi09g00194 629 SUPERFAMILY L domain-like 37 208 - -
Lsi09g00194 629 PANTHER OS05G0588300 PROTEIN 21 608 - -
Lsi09g00194 629 ProSitePatterns Protein kinases ATP-binding region signature. 332 363 IPR017441 GO:0005524
Lsi09g00194 629 Pfam Leucine Rich Repeat 186 207 IPR001611 GO:0005515
Lsi09g00194 629 Pfam Leucine rich repeat 82 127 IPR001611 GO:0005515
Lsi09g00194 629 Pfam Leucine rich repeat N-terminal domain 26 62 IPR013210 -
Lsi09g00194 629 Pfam Protein tyrosine and serine/threonine kinase 330 593 IPR001245 GO:0004672|GO:0006468
Lsi09g00194 629 Gene3D Transferase(Phosphotransferase) domain 1 402 620 - -
Lsi09g00194 629 SUPERFAMILY Protein kinase-like (PK-like) 330 611 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g00046 Lsi-Chr9:402193 Lsi09g00194 Lsi-Chr9:2018164 0 dispersed
Lsi09g00194 Lsi-Chr9:2018164 Lsi10g01489 Lsi-Chr10:19061529 0 dispersed
Lsi09g00194 Lsi-Chr9:2018164 Lsi05g01168 Lsi-Chr5:19611775 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83874 PF07714 PK_Tyr_Ser-Thr 1.40E-34 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00194 - - csv:101211836 1087.02