Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00195 ATGGAAAAAGGGGAAGGGAAGAGTGGGGAAGGGGGAGCAGAAAAGGAGGAAAATTTGGGAAAAAGGTTAAGGAGAGAGGTTTTGATAGGGAAAAGATGTGGACCTTGCACTCCAGTGCCTTCATGGAGGATTTGGGCTCCTCCTCCTCAAGAGACCATCATTAGCCAAACAGACCCTTTTTACCATAATTCTTGTTTTTCTTCTACTTCTTCTATCTCTGCCAGAAAGCTAGCGGCGGCCCTTTGGGAGTTTCATCAATACCTTCCACTTCCTAAAATGCACAGAGCTTCCAATAATGGTGTTTCTAATGGTGCTCCTGCTGCTGATTCAAGGCTCATCCGCCGCCGCTACTTCCATCATCATCATCACTCTCATAAGGATAAAACCCTTGACCTTTCCAATTTTCTTGGTGATCCTTGCCCCAGCTCTCCTGAACAGCCAGCAAGTGCAAGCAGTTTAAGGAGGCATGTTGCTGCATCACTGTTGCAACATCATCAATCAACTGAAAGGAACAATCAAGCTCTTCAGCCCGAATCTCCAAGCTATGGCAGTTCCATGGAGGTGGCACCTTATAACCCTGCAATGACTCCTACGAGTTCTTTGGACTTCAAGGGAAGACTTGGTGAATCACATTATAGTCTTAAGACATCCACTGAACTGCTAAAAGTATTAAACCGAATCTGGAGTTTGGAAGAGCAACATGCGTCGAATATAGCCTTGATAAAAGCATTGAAAACAGAACTCGACCATGCTCATGTCAAGATGAAGGAGCTGCTTCGACAACGGCAAGCTGATCGCCATGAGATGGATGATTTAATAAAGGAAATTGCAGAAGACAAACTAGTTAGAAAAAACAAGGAAGAAGATCGTATCAAGGCTGCAATTCAGTCCGTGAGAGATGAACTTGAAAATGAGAGGAAGTTGAGGAAACGATCAGAGAGCCTACACAGGAAGTTTGCTAGAGATCTATCTGAGACAAAATCTTCTCTTGTAAATGCCCTAAATGAGATGGACAGAGAAAGAAAGTCTAGGATGCTATTAGAGGATCTCTGTGATGAATTTGCCAGGGGTATAAAACACTACGAGAACCTGGTGCATTGCTTAAAACCGAAATCTGACAGGATCGCTGCTGGAAGAGCCGACCGTGATGGTTTAATTCTCCATATTTCGGAAGCTTGGCTTGATGAAAGGATGCAGATGCAGCAAGAACACAATGAGACCAACGCCGGGAAGTCTGTTGTGGAGAAACTGCAACTTGAAATAGAGAGCTTTCTTGAAGGGAAGCGAAATGATGCCAATGATAGCAAGAATGACCAATTGTTAAGAGACCGCCGGAGTTCACTTGAGTCAGTCCCATTGAATGAGGCTGCCAGTGCACCTCAAGCTGGGGACGATGAAGATTCTCAAGATAGTGATTCACATTGTTTTGAGTTAAACAAGCCAAACAACAGCAATACGATGACTCACGAAAACGAGAATGCAGGAGATCATGTTGATGAAACAGGGAAATCAAACGACGTGCAAAGGAAACTCCTGTCTCATGAGAGGTCAAAAAGCCGTACCCCGTCCAGTTTGCAAGTAAGGTTTGAAGAACAGATGGCATGGGCAAGGTCTTGTATAGGAAACAAGAAGGCCCAGTTGGTAAACATAGAACAAGGAAAAGCAGAAGCGTTGCTTTCCGAAGCAAACAAACCTTGCAAGACTGAGAACTGTCAAGACGCTGAAGGTGGAAGTAACGAGAGAAGAAACAACCACCACCCGATCCATGGCTCAAACTCAAACCACATGCTGGACAATCTTATCAGAAATCAACTTTCATTGAAGGATGGAGACAATGTGCATCCTGAAGATACTTATGGTGAGGCCTCTTGCAGCAACTCAGGGTGGAGGAATCAAGCAAGTCCAGTGAGACAGTGGACAGTAGCAGCCCCAGACGTTAACACGACACAGACGTCATCTTTGAAATTGCCTCCTGGACTAAAGGAAAACACTCTGCACGCAAAGCTTCTCGAAGCAAGGTCGAAGGCGACTCGCTCACGGTTAAAACTTTTCAAGTGA 2058 44.85 MEKGEGKSGEGGAEKEENLGKRLRREVLIGKRCGPCTPVPSWRIWAPPPQETIISQTDPFYHNSCFSSTSSISARKLAAALWEFHQYLPLPKMHRASNNGVSNGAPAADSRLIRRRYFHHHHHSHKDKTLDLSNFLGDPCPSSPEQPASASSLRRHVAASLLQHHQSTERNNQALQPESPSYGSSMEVAPYNPAMTPTSSLDFKGRLGESHYSLKTSTELLKVLNRIWSLEEQHASNIALIKALKTELDHAHVKMKELLRQRQADRHEMDDLIKEIAEDKLVRKNKEEDRIKAAIQSVRDELENERKLRKRSESLHRKFARDLSETKSSLVNALNEMDRERKSRMLLEDLCDEFARGIKHYENLVHCLKPKSDRIAAGRADRDGLILHISEAWLDERMQMQQEHNETNAGKSVVEKLQLEIESFLEGKRNDANDSKNDQLLRDRRSSLESVPLNEAASAPQAGDDEDSQDSDSHCFELNKPNNSNTMTHENENAGDHVDETGKSNDVQRKLLSHERSKSRTPSSLQVRFEEQMAWARSCIGNKKAQLVNIEQGKAEALLSEANKPCKTENCQDAEGGSNERRNNHHPIHGSNSNHMLDNLIRNQLSLKDGDNVHPEDTYGEASCSNSGWRNQASPVRQWTVAAPDVNTTQTSSLKLPPGLKENTLHAKLLEARSKATRSRLKLFK 685
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2066308 2070725 - Lsi09G001950.1 Lsi09g00195 669808

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00195 685 MobiDBLite consensus disorder prediction 569 595 - -
Lsi09g00195 685 MobiDBLite consensus disorder prediction 608 631 - -
Lsi09g00195 685 MobiDBLite consensus disorder prediction 447 502 - -
Lsi09g00195 685 Coils Coil 241 315 - -
Lsi09g00195 685 MobiDBLite consensus disorder prediction 136 187 - -
Lsi09g00195 685 PANTHER INTRACELLULAR PROTEIN TRANSPORTER USO1-LIKE PROTEIN 10 685 - -
Lsi09g00195 685 MobiDBLite consensus disorder prediction 161 187 - -
Lsi09g00195 685 PANTHER GB|AAF24581.1 10 685 IPR043424 -
Lsi09g00195 685 Coils Coil 320 340 - -
Lsi09g00195 685 MobiDBLite consensus disorder prediction 475 491 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00195 - - - csv:101210931 1223.38
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g00195 Lsi-Chr9:2066308 Lsi10g01146 Lsi-Chr10:15785256 1.50E-23 dispersed
Lsi09g00195 Lsi-Chr9:2066308 Lsi03g01861 Lsi-Chr3:30035049 1.57E-49 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g80 Blo02g01132 Blo03g00236 . Bda08g00492 Bpe05g00672 . Bma07g01677 Bma14g00623 . . Cma02g01410 Cma15g01261 Car02g01182 Car15g01137 . . Cpe05g00369 . . . . . . . . . . . . . . Cone8ag0263 Cone12ag0268 . . . Csa05g00224 Chy09g01276 . . . Bda07g00468 . Bpe08g01512 Bpe11g00645 Bma05g00845 . . Cmo02g01440 Cmo15g01329 . . . . . Cpe13g00126 Bhi12g00168 . . Lac11g2030 Hepe06g1499 . Lcy12g1592 Cla01g00207 Cam01g0212 Cec01g0207 Cco01g0210 Clacu01g0207 Cmu01g0202 Cre09g2305 Lsi09g00195 . . Cme09g01820
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004600 2 1 2 3 3 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00195 Lsi_Chr09 FPKM 16.785168 19.1992 28.716974 28.727203 38.152058 34.997135 39.759655 25.245663 26.964096 29.853016