Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00196 ATGATTCTTTTCCCATTCTTTTCAGGTTTTCAAGTTGTTGCCGGACAACAACTCGCAAACAATGGTATTGGCACAAATCAGAAGTGGTTTCAAAATATTATGATCGCCAATAGCCGTGAGTTATCTACAAAATCAGTAACTGTTGTGGATAATTGTTGTGCATCTGAAAAGTCATTAGCAAAGTACAGCTCAGCAAAGGGAATTCATGAAAATACAGATAACCAGTTTAGAAGTATAGTCAGCAGTTCATTTCTGAAGTTCATGCTCTTGTCTGGGTTCTTCATACTTCAAGATTCTCAGCAGGCATTAGCTGGTTCAGATGTTGCTACTGGGTTGCAGTCAGTCCCACCTCTGGGAGACCTTGGTGATATTAGCACAGGTTTTGCTTCAGCATTTTTGCTAATCTTTTTCTCAGAACTAGGGGACAAGACCTTTTTCATTGCAGCTCTTCTAGCAGCTAGGAACTCTGCTGCTACTGTTTTCACTGGAACTTTTGGTGCACTTGCGGCAATGACCATCATATCTGTTGTTCTGGGACGAACTTTTCACTATGTTGATGAGATTCTTCCATTCAGGTACAATCCTTGTGATAAGCACCTCTTTAGGAATATGAAGAAGTCAAGAGGTTCAGTTCTTAAACTGCTTGGTGATAGTGATTTACCAGTTGATGATATTGCAGCTGTCTGTCTCTTGGTGTATTTTGGGGTTACAACATTGCTTGATGCCAGCTCAAGCGATGGACTAAAGGCAGAAGATGAGCAGAAGGAGGCAGAGTTAGCTGTCTCAAAGTTCTCAGGAAATGGTGCTGGGATATTAGCTGCTGCCAGTACTGTCGTCAGCACCTTTGCATTAGTGTTTGTAGCTGAGTGGGGTGACAAGTCATTTTTCTCTACGATTGCCCTTGCTGCTGCTTCTTCACCCCTTGGAGTCATTGGAGGTGCACTAGCTGGTCATGGTGTTGCAACATTGATTATTGCATACGTTGGAGGTGTTCTTTTTCTCGTCTTCGCTGCCGTAACTTTAGTCGAGATAGTAAACTAG 1041 42.46 MILFPFFSGFQVVAGQQLANNGIGTNQKWFQNIMIANSRELSTKSVTVVDNCCASEKSLAKYSSAKGIHENTDNQFRSIVSSSFLKFMLLSGFFILQDSQQALAGSDVATGLQSVPPLGDLGDISTGFASAFLLIFFSELGDKTFFIAALLAARNSAATVFTGTFGALAAMTIISVVLGRTFHYVDEILPFRYNPCDKHLFRNMKKSRGSVLKLLGDSDLPVDDIAAVCLLVYFGVTTLLDASSSDGLKAEDEQKEAELAVSKFSGNGAGILAAASTVVSTFALVFVAEWGDKSFFSTIALAAASSPLGVIGGALAGHGVATLIIAYVGGVLFLVFAAVTLVEIVN 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2073879 2081422 + Lsi09G001960.1 Lsi09g00196 669809

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00196 346 PANTHER TRANSMEMBRANE PROTEIN HTP-1 RELATED 43 194 IPR001727 -
Lsi09g00196 346 PANTHER PROTEIN PAM71, CHLOROPLASTIC 215 346 - -
Lsi09g00196 346 PANTHER PROTEIN PAM71, CHLOROPLASTIC 43 194 - -
Lsi09g00196 346 PANTHER TRANSMEMBRANE PROTEIN HTP-1 RELATED 215 346 IPR001727 -
Lsi09g00196 346 ProSitePatterns Uncharacterized protein family UPF0016 signature. 139 148 IPR001727 -
Lsi09g00196 346 Pfam Uncharacterized protein family UPF0016 280 332 IPR001727 -
Lsi09g00196 346 Pfam Uncharacterized protein family UPF0016 130 190 IPR001727 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00196 - - - csv:101211177 478.404
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01803 Lsi-Chr5:25289051 Lsi09g00196 Lsi-Chr9:2073879 2.27E-23 dispersed
Lsi09g00196 Lsi-Chr9:2073879 Lsi11g00865 Lsi-Chr11:11135663 4.11E-07 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g70 . . . . . . . Bma14g00621 . . Cma02g01412 Cma15g01259 Car02g01183 Car15g01136 . . . . . . . . . . . . . . . . . Cone8ag0265 Cone12ag0270 . . . Csa05g00225 Chy09g01275 . . . . . . Bpe11g00647 . . . Cmo02g01441 Cmo15g01328 . . . . . . Bhi12g00170 . . Lac11g2031 Hepe06g1500 . Lcy12g1593 Cla01g00208 Cam01g0213 Cec01g0208 Cco01g0211 Clacu01g0208 Cmu01g0203 Cre09g2304 Lsi09g00196 . . Cme09g01818
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008642 0 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 0 1 1 1 1 1 1 1 1 1 3 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00196 Lsi_Chr09 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 2.342875 5.86417 4.382476 4.532543