Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00198 ATGGGCTCAAGCTTCCAGAACTTGAATTTTGCTGCCAATTATTCGTTGAATGTATTAAAGTTTTTGGGAAAGTCTTACCAAGATGGGAAAAATGGAGCTGAAGACAGTGCAGATACCATTCTTCGACTTGATTCCACTGGATCTGTCCCCTGTGGGTCCATATCAAAGGGAATGAAACGGAAGTGGAGTTTGGTTGAGAAATCCATGGGCCAGTCAGTTGGGTCTTCTTTGTCTCTTGGGTTTGTTCATTCCTCAAGTTCTTCTGACAGCAAGGGGAGTTCAGCAACTGCATGCACCAGAGTGTCTTCTGCTAAAGAAACTGATGAGGAATCCTCAATGGCACTTGATCTGGATTTTTCTCTCAATCTTGGTAGTGATAAGGTAGCTAGCCCTAAAGAACCTGCCAGTAAGTCACTTAAAGTACAGAAGGTTAAACCGAAGGTTGACTTGGAGTTAAGTCTCTCAACTGGGCCATCTGAATCTGATGTCACTTCAATTTATCAGGGTTTTCCCTCACTTCAGTTGTCAATAGAGAAGCCATTGACATTTGTTGAAACCTTGAACATAGATGATGGAGAAACATCTTGTTGTTGGAAGCCAGGAACTGCCCAGCCAGTCATGCCTACCTCTTTGAATCCCCAGGTTGGCTACATTTTTCCCCCAGTTACTGAGATAGTGATTCCACCTGCCAATGTTCCAGACCTTTCCTCGAGCGTTTTAACCATGCCAAAAAGCTCAGTCACCTGTACTTCCGGGATAACACAACAGCAGCAAGCACGATTTAATCGTAGTAGTAATTCCAAGATATGCCAGGTTGAGGGATGTGGCAAGGGAGCCAGAGGTGCTTCTGGCCGTTGCATATCACATGGTGGTGGTCGGAGGTGTCAGAAAGCTGGATGCCACAAAGGAGCTGAGGGTCGCACTGTATACTGCAAGGCCCATGGAGGTGGACGACGATGTCAACACTTGGGATGCACCAAGAGTGCAGAAGGACGCACAGACTACTGTATTGCCCATGGTGGAGGCCGAAGATGCAATCGCGAAGGATGCACTCGAGCAGCAAGAGGGAAATCAGGATTATGCATTCGTCACGGTGGTGGCAAGAGATGTCAGAAGGAGAACTGCACCAAAAGTGCAGAAGGCCTCTCCGGTCTTTGCATCTCTCATGGTGGTGGTAGGCGATGCCAAACACCTGGGTGCACTAAAGGGGCACAAGGGAGCACCATGTACTGCAAGGCTCATGGTGGGGGAAAACGATGTACGGCTCCTGGTTGTACCAAAGGTGCTGAAGGGAGCACCCCATTTTGCAAGGGCCACGGCGGTGGAAAAAGGTGCGGATTCCAAGGAGGTGGCATTTGTACCAAGAGTGTCCATGGGGGTACCAACTTCTGTGTGGCACATGGTGGGGGCAAGAGATGTGCTGTTCCTGAGTGCAAAAAAAGTGCTAGGGGAAGGACGGATTATTGTGTACGTCATGGTGGGGGAAAGAGATGCAAGTTTGAAGGGTGTGGCAAGAGTGCTCAAGGAAGCACAGATTTCTGCAAGGCACATGGTGGAGGAAAGAGATGTTCTTGGGGTCATCCTGGGTCTGAGTATGGCACTCCACCCTGTTGCCCATGCAATTCATTCGCCAGAGGGAAGATGGGTCTCTGTGCACTTCATAGTGGCCTTGTGCAAGATAAGAGGGTTCATGGGGGTGTCTCACTTGGACCTATTATTCAGGACCCTAGTCTCAGCAAGACAGAGAAGATGAAGGGAGTAGTCGGGGAAGACTACATGAATGAAGATCTTATCAAGGTTGGAGGCAAAGTTGGTCCAAATCTTGAGCACTTTGCAGGCACTGAATCAGAAAAACCATCGGCATCAGTTCCCGTTCCTGAAGGTAGAGTGCATGGTGGAAGTTTGTTGGCAATGCTTGCTTGCAGCTCAGGACTGGGCTCAAGCAGTAGAAATGCAGTTTCTGGTCCTGATCAGCCAATGGAGCCTCACATCATGCCTCGGAGTTGGGTGTGA 2013 48.93 MGSSFQNLNFAANYSLNVLKFLGKSYQDGKNGAEDSADTILRLDSTGSVPCGSISKGMKRKWSLVEKSMGQSVGSSLSLGFVHSSSSSDSKGSSATACTRVSSAKETDEESSMALDLDFSLNLGSDKVASPKEPASKSLKVQKVKPKVDLELSLSTGPSESDVTSIYQGFPSLQLSIEKPLTFVETLNIDDGETSCCWKPGTAQPVMPTSLNPQVGYIFPPVTEIVIPPANVPDLSSSVLTMPKSSVTCTSGITQQQQARFNRSSNSKICQVEGCGKGARGASGRCISHGGGRRCQKAGCHKGAEGRTVYCKAHGGGRRCQHLGCTKSAEGRTDYCIAHGGGRRCNREGCTRAARGKSGLCIRHGGGKRCQKENCTKSAEGLSGLCISHGGGRRCQTPGCTKGAQGSTMYCKAHGGGKRCTAPGCTKGAEGSTPFCKGHGGGKRCGFQGGGICTKSVHGGTNFCVAHGGGKRCAVPECKKSARGRTDYCVRHGGGKRCKFEGCGKSAQGSTDFCKAHGGGKRCSWGHPGSEYGTPPCCPCNSFARGKMGLCALHSGLVQDKRVHGGVSLGPIIQDPSLSKTEKMKGVVGEDYMNEDLIKVGGKVGPNLEHFAGTESEKPSASVPVPEGRVHGGSLLAMLACSSGLGSSSRNAVSGPDQPMEPHIMPRSWV 670
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2095327 2097339 + Lsi09G001980.1 Lsi09g00198 669811

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00198 670 PANTHER F22C12.10 1 652 - -
Lsi09g00198 670 PANTHER EMB|CAB89363.1 1 652 - -
Lsi09g00198 670 MobiDBLite consensus disorder prediction 85 105 - -
Lsi09g00198 670 MobiDBLite consensus disorder prediction 647 670 - -
Lsi09g00198 670 MobiDBLite consensus disorder prediction 85 102 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00198 - - - csv:101212238 1288.86
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g00198 Lsi-Chr9:2095327 Lsi09g01013 Lsi-Chr9:13895091 9.04E-156 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g69 Blo02g01129 . . Bda08g00495 Bpe05g00668 . Bma07g01676 Bma14g00620 . . Cma02g01414 Cma15g01258 Car02g01184 Car15g01135 . . Cpe05g00368 . . . . . . . . . . . . . . Cone8ag0266 Cone12ag0271 . . . Csa05g00227 Chy09g01273 . . Blo19g00353 Bda07g00470 Bda09g00022 Bpe08g01511 Bpe11g00648 Bma05g00843 . . Cmo02g01443 Cmo15g01326 . . . . . Cpe13g00127 Bhi12g00171 . . Lac11g2032 Hepe06g1501 . Lcy12g1594 Cla01g00210 Cam01g0215 Cec01g0209 Cco01g0213 Clacu01g0210 Cmu01g0204 Cre09g2303 Lsi09g00198 . . Cme09g01816
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003660 3 1 3 3 3 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 3 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00198 Lsi_Chr09 FPKM 2.653436 4.914397 0.953862 1.455458 8.37455 7.531446 7.493912 0.753123 0.875139 0.717951