Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00200 ATGGCGGAGCATCACGACCACGAGCATGAACACGAGGAGCCTAAAGGTGAGTCGTTGCTTGACAAGATTACTGAGAAGATTCACGCTCATGATTCGTCTTCTTCCGATTCGGATGATGACAAGGGCGACACTTCTGCTTCTATCAAATCTAAGATTTATCGCCTCTTCGGTAGGGAAAGGCCCGTCCACAAGGTTTTCGGCGGGGGAAAACCGGCTGATATCTTCCTGTGGAGAGACAAAAAGTTATCCGGTGGAGTTCTAGGAGGAGCAACAGTCGCATGGATTTTGTTTGAGTTGCTTGAATATCACTTTCTGACCTTGATTTGCCACATTTTTATGGCTGCTTTAGCAGTAGTGTTTTTGTGGTCAAATGCTTCTTTCTTCATTAACAAGTCTCTGCCGCACATCCCTCAAGTTCACATTCCAGAGGAGCCAGTTAAAGAGATTGCCACTGCTTTGAGAGTTGAAATCAATAGAGCCATTGCTGTCTTGAGAGAAATTGCATCAGGAAGGGATCTGAAGAGCTTTCTTTATGCAATTGCTGGTTTGTGGGTTCTGTCCATTGTGGGAAGCTGGTTCAACTTCCTAACCTTGCTATATATTGGAGTTATTTTGCTGTTCACTGTGCCCGTGTTCTATGAGAAATACGACGACAAGGTGGATGCTTTTGCAGAGAAGGCGATGGCCGAGATCAAGAAACAGTATGTAGTATTTGATGCTAAGGTGCTTTCTAAAATCCCAAGAGGACCACTGAAGGACAAAAAGATTGCTTGA 774 44.57 MAEHHDHEHEHEEPKGESLLDKITEKIHAHDSSSSDSDDDKGDTSASIKSKIYRLFGRERPVHKVFGGGKPADIFLWRDKKLSGGVLGGATVAWILFELLEYHFLTLICHIFMAALAVVFLWSNASFFINKSLPHIPQVHIPEEPVKEIATALRVEINRAIAVLREIASGRDLKSFLYAIAGLWVLSIVGSWFNFLTLLYIGVILLFTVPVFYEKYDDKVDAFAEKAMAEIKKQYVVFDAKVLSKIPRGPLKDKKIA 257
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2116532 2120898 - Lsi09G002000.1 Lsi09g00200 669813

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00200 257 PANTHER RETICULON-LIKE PROTEIN 8 256 - -
Lsi09g00200 257 ProSiteProfiles Reticulon domain profile. 71 257 IPR003388 -
Lsi09g00200 257 PANTHER RETICULON 8 256 IPR045064 GO:0009617
Lsi09g00200 257 MobiDBLite consensus disorder prediction 1 20 - -
Lsi09g00200 257 Pfam Reticulon 72 227 IPR003388 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00200 - - - csv:101212804 476.478
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01177 Lsi-Chr5:19689445 Lsi09g00200 Lsi-Chr9:2116532 3.14E-105 dispersed
Lsi02g00209 Lsi-Chr2:1735448 Lsi09g00200 Lsi-Chr9:2116532 1.73E-07 transposed
Lsi03g00267 Lsi-Chr3:3292678 Lsi09g00200 Lsi-Chr9:2116532 2.19E-38 transposed
Lsi03g02173 Lsi-Chr3:32803494 Lsi09g00200 Lsi-Chr9:2116532 1.43E-40 transposed
Lsi05g00236 Lsi-Chr5:3129146 Lsi09g00200 Lsi-Chr9:2116532 8.48E-50 transposed
Lsi07g00810 Lsi-Chr7:9033864 Lsi09g00200 Lsi-Chr9:2116532 1.01E-57 transposed
Lsi05g02077 Lsi-Chr5:27651898 Lsi09g00200 Lsi-Chr9:2116532 7.47E-104 wgd
Lsi09g00200 Lsi-Chr9:2116532 Lsi09g01599 Lsi-Chr9:24121430 1.23E-93 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g61 Blo02g01126 . Bda06g00125 Bda08g00499 Bpe05g00665 Bpe07g00090 . . Cmo06g01077 . Cma02g01416 Cma15g01257 Car02g01186 Car15g01134 . . Cpe05g00366 . . . . . . . . . . . . . . Cone8ag0269 Cone12ag0275 Cone6ag0819 Cone9ag0818 . Csa05g00229 Chy09g01271 . . . . . . . . Bma12g00060 . Cmo02g01447 Cmo15g01325 . . Car06g00886 . . Cpe13g00128 Bhi12g00174 . . Lac11g2034 Hepe06g1503 . Lcy12g1596 Cla01g00212 Cam01g0217 Cec01g0211 Cco01g0215 Clacu01g0212 Cmu01g0206 Cre09g2301 Lsi09g00200 . . Cme09g01814
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000326 4 3 4 3 4 4 7 4 4 5 4 4 7 3 4 7 4 9 7 4 4 4 4 4 4 4 4 6 4 3 136
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00200 Lsi_Chr09 FPKM 0.091912 0.080609 0.009021 0.032158 0.032724 0.337136 0.102908 0.0 0.0 0.0