Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00204 ATGACAGGAAAAAATATTGCTTTAGCTTGTGTTTTTGTATTGTTAACTTTAAAGGCCTATTCATTGCCTCTTTCAACCAATGGAAGATGGATCGTTGATGCCACAACTGGCCGACGCATGAAGTTGATGTGCGTAAATTGGCCCGGACACATGCAAGCTATGGTGGCAGAGGGTCTTCATCTCCGACCCCTTGATGATATTGCAGCCTCCGTGGCAAAGTTGCGGTTTAGTTGCGTGCGTTTGACATACTCAATCCACATGTTCACACGCTACGCGAATTTGACTGTTCAACAATCCTTTGAGAATTTTGATTTGAAAGATGCCATGGCAGGCATATCCCAAAACAATCCTTCCATATTAAACATGACGTTGATTGAGGCTTATGAAACAGTGGTTGATTCACTTGCTATACATGGAGTCATGGTAGTTTCTGATAATCATATAAGCCAACCAAGATGGTGTTGTAGTGATGATGATGGCAATGGCTTCTTTGGTGATCGCTATTTCGATCCACAAGAATGGCTACAAGGAATTAGTTTGGCAGCTCAAACCCTAAAAAACAAACCCCAAGTGGTGGCAATGAGTTTGAGAAACGAACTGCGAGGACCAAACCAAAACGTGGAGGAGTGGTTTCAATATATGAGTCAAGGAGCTAAGCTTATTCACCAAATTAACCCAAATGCTTTAGTAGTGGTTTCTGGATTAAGTTATGACACCGATTTAAGCTTCTTGAAAAATAGGTCGATGGGCTTCAATTTAGACAATAAGCTTGTATTTGAGGCTCACTTGTACTCCTTTACAAACAACATGGGTGATTATTGGACGTCCAAGCCACTAAATACATTTTGTGCTAATGTCAACCAAGGATTTGAAGACCGAGCTGGGTTTCTTGTAAGAGGACAAAACCCAATGCCTCTCTTTGTGAGTGAGTTTGGGATCGACCAAACAGGTGCAAATGAAGGCCAAAATCGATTCTTGAGTTGCTTTTTTACCTATCTTACCGAGAATGATTTTGATTGGGGACTATGGGCGTTGCAAGGTAGCTACTACTATAGGGAAGGTGTGAAAAATGCTGAGGAAACCTTTGGCGTCTTAGATTCCAAGTTTACAAATGTCAAAAACCCTAAATTCCTTCAGAGGTTTCAGCTTATGCAAACCAAACTTCAAGGTATAGCTTTTAAAGTGATATGTTTCGTTTCCACAATTATTTTCTTGAATTATTTAGGTTTTAAGAAATCAAAATGGGTTTTCTCTTTTAACACAGATCCAAGTTCAAATCTCACCACATCATTCATAATGTACCATCCTTTTAGTGGTGAATGTGTGCGAATGGATAGAAAGTATCAATTAGGAGTTAGTAGTTGTAAGACCTCTAATCGTTGGAGCCATGAAGAAGATGGTGCTCCAATTAAGTTGGCAGGATCTATATTGTGTTTGAAAGCCATTGGAGAAGGGCTCCCTCCAACTCTCTCTAAAGACTGCTCGAGCCAACAAAGTGCTTGGAAATATGCTTCGAATGCAAAGCTTCAACTAGCCACCATTGATCAACAAGGACAAGCATTGTGCTTGCAAAGGGCTTCTCACTCCCATCAAATTGTGACTAACAAGTGTATGTGTCTGAATGATTCTGAATGCCAAGGAGATCCACAAAGCCAATGGTTTACACTTGTCCCATCAAATAGATCAAGTGTTTTTATATTAAAGCTTGTAATTAACATTGAAGATAATGGTTTTGATTCTATTCTTTGTTTACAAAAAAAGAGTCGGAATTTTCTTAAC 1779 39.57 MTGKNIALACVFVLLTLKAYSLPLSTNGRWIVDATTGRRMKLMCVNWPGHMQAMVAEGLHLRPLDDIAASVAKLRFSCVRLTYSIHMFTRYANLTVQQSFENFDLKDAMAGISQNNPSILNMTLIEAYETVVDSLAIHGVMVVSDNHISQPRWCCSDDDGNGFFGDRYFDPQEWLQGISLAAQTLKNKPQVVAMSLRNELRGPNQNVEEWFQYMSQGAKLIHQINPNALVVVSGLSYDTDLSFLKNRSMGFNLDNKLVFEAHLYSFTNNMGDYWTSKPLNTFCANVNQGFEDRAGFLVRGQNPMPLFVSEFGIDQTGANEGQNRFLSCFFTYLTENDFDWGLWALQGSYYYREGVKNAEETFGVLDSKFTNVKNPKFLQRFQLMQTKLQGIAFKVICFVSTIIFLNYLGFKKSKWVFSFNTDPSSNLTTSFIMYHPFSGECVRMDRKYQLGVSSCKTSNRWSHEEDGAPIKLAGSILCLKAIGEGLPPTLSKDCSSQQSAWKYASNAKLQLATIDQQGQALCLQRASHSHQIVTNKCMCLNDSECQGDPQSQWFTLVPSNRSSVFILKLVINIEDNGFDSILCLQKKSRNFLN 593
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2142119 2144832 - Lsi09G002040.1 Lsi09g00204 669817

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00204 593 SUPERFAMILY (Trans)glycosidases 23 378 IPR017853 -
Lsi09g00204 593 PANTHER CELLULASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_5G14560) 5 392 - -
Lsi09g00204 593 PANTHER CELLULASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_5G14560) 421 558 - -
Lsi09g00204 593 Pfam Cellulase (glycosyl hydrolase family 5) 63 346 IPR001547 GO:0004553|GO:0071704
Lsi09g00204 593 SUPERFAMILY Ricin B-like lectins 429 537 IPR035992 -
Lsi09g00204 593 Gene3D Glycosidases 22 387 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00204 K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4] - csv:105435091 978.778
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00629 Lsi-Chr4:5756806 Lsi09g00204 Lsi-Chr9:2142119 8.72E-145 dispersed
Lsi09g00204 Lsi-Chr9:2142119 Lsi09g00206 Lsi-Chr9:2152547 0 dispersed
Lsi09g01538 Lsi-Chr9:23511637 Lsi09g00204 Lsi-Chr9:2142119 0 dispersed
Lsi09g00203 Lsi-Chr9:2137046 Lsi09g00204 Lsi-Chr9:2142119 0 tandem
Lsi09g00204 Lsi-Chr9:2142119 Lsi09g00205 Lsi-Chr9:2147238 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g57 . . . . . . . . . . Cma02g01417 . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00230 Chy09g01269 . . . . . . . . . . Cmo02g01449 Cmo15g01324 . . . . . . Bhi12g00176 . . Lac11g2036 Hepe06g1504 . Lcy12g1598 Cla01g00217 Cam01g0224 Cec01g0215 Cco01g0223 Clacu01g0219 Cmu01g0212 Cre09g2296 Lsi09g00204 . . Cme09g01810
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000102 1 5 0 0 1 17 0 16 15 11 16 15 7 9 8 11 14 2 0 12 12 11 2 7 10 18 6 7 5 3 241
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00204 Lsi_Chr09 FPKM 81.44043 80.69899 28.723173 25.187172 12.848559 12.788496 13.154712 15.199911 16.97937 14.995453