Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00217 ATGTATGTTTGGGAGTGCTTCGATCAAACTCTTCTCTTCCACAACCTCAGGAGACACACACAGAGTCGGCCGTGGATCTTCTTCACCGACAACCAACCAGAACCCATGGCTGCTCCCGAAGCTCCTGTCTGCTACGTCGGCGTCGCAAGACAATCCGCAGCTTTTCGCCTCATGAAGCAGATGGGTTGGGAAGAAGGAGAAGGGCTTGGCAAGGACAAGCAAGGGATCAAAGGCCATGTTAGGATTAAAAATAAACAAGATACTGCCGAGAAAAAAGATGACACTTCGGTGGAAACTGTGGATGATGCAACCAATGATCAGGATCTGGTTACTAAGGCAACACGACCACAAGGAAGATACAAAAGAAGAGAGAGAGGAAAGCTCGTCAATGCATATTCTTCTAAGGATCTCGAAGGGATCCTTGTAAAAAAGGTGGAGGAGTTACCACAAACATGTTCTAATGCAGATACTGAACCAGAGTCGTCAGAGGAATCTGAAATTGAAATTCTTGCCGTTGAAGAAAACAGAGTTGGTGTTTCTTCTGAATGGTGGGGCTACAAATATGGATTTATTTCTGGAGGATATTTGGGTGCTGAATCTAAACGAAGAAAAGGCCTTCAGACCAAAAGCAATGAGAATGTGCATAAGAGAACCGCCTTTCATGAAGATGATCAAGAGAATCTATACAAGCTTGTTCAAGATAAATCCACAACTGGAAAGCAAGGCCTGGGTATTAAGAGTAGACCAAAAAAAATAGCTGGCTGCTACTTTCAAGGGAAAAAGACTTCCTTCGATGAAAGTGATGATGAAGACTCTGGTGATGCTGCACCTCCCTTGAAACGGAAGTATGACGACTCCTTCAGTGCAGCAACAGTAAAATCCGACGGGCAGCAGAAAGTGAAGTTGAGAAAATTGTGTAAAACGATTCTTAGCCAAGTACCTGGGGAATCTTTAAAGCTGAAGCAGCTGAAAGCTTTGATTGATGAACGTGCCACTTCAGTTTTTGCCAACTATTCTTCTAAGAAAGATGCACTTGCTTATTTGAAACAGAAGTATTTTCCCACAAAGCTCATAGCATCTAAGAGTGGTCAACATATATGTATGTCCCCTCACAAAGCGCGAAGAGTAATTGATCAGATTCGTGGACGTTCCTACGAAGAAACAATGATGATACTCGAACTCATGCCTTATCGAGCATGTTATCCAATTTTAAAATTGGTTTATTCGGCAGCAGCAAATGCTAGTCACAATATGGGTTTCAACGAAAGAGATTTAGTCATTAGTAAAGCAGAAATTTTGAGTGTTGAAGAAGGCTTCTTGAGTAATTTGCATCAACATATTTGA 1344 42.19 MYVWECFDQTLLFHNLRRHTQSRPWIFFTDNQPEPMAAPEAPVCYVGVARQSAAFRLMKQMGWEEGEGLGKDKQGIKGHVRIKNKQDTAEKKDDTSVETVDDATNDQDLVTKATRPQGRYKRRERGKLVNAYSSKDLEGILVKKVEELPQTCSNADTEPESSEESEIEILAVEENRVGVSSEWWGYKYGFISGGYLGAESKRRKGLQTKSNENVHKRTAFHEDDQENLYKLVQDKSTTGKQGLGIKSRPKKIAGCYFQGKKTSFDESDDEDSGDAAPPLKRKYDDSFSAATVKSDGQQKVKLRKLCKTILSQVPGESLKLKQLKALIDERATSVFANYSSKKDALAYLKQKYFPTKLIASKSGQHICMSPHKARRVIDQIRGRSYEETMMILELMPYRACYPILKLVYSAAANASHNMGFNERDLVISKAEILSVEEGFLSNLHQHI 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2259503 2272791 - Lsi09G002170.1 Lsi09g00217 669830

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00217 447 MobiDBLite consensus disorder prediction 69 125 - -
Lsi09g00217 447 SMART G-patch_5 48 100 IPR000467 GO:0003676
Lsi09g00217 447 Pfam Ribosomal protein L22p/L17e 363 430 IPR001063 GO:0003735|GO:0005840|GO:0006412
Lsi09g00217 447 PANTHER BNAA09G11800D PROTEIN 107 274 - -
Lsi09g00217 447 PANTHER BNAA09G11800D PROTEIN 36 90 - -
Lsi09g00217 447 PANTHER G PATCH DOMAIN CONTAINING PROTEIN 107 274 - -
Lsi09g00217 447 SUPERFAMILY Ribosomal protein L22 348 431 IPR036394 GO:0003735|GO:0005840|GO:0006412
Lsi09g00217 447 PANTHER G PATCH DOMAIN CONTAINING PROTEIN 297 352 - -
Lsi09g00217 447 PANTHER G PATCH DOMAIN CONTAINING PROTEIN 36 90 - -
Lsi09g00217 447 Gene3D Ribosomal protein L22/L17 359 436 IPR036394 GO:0003735|GO:0005840|GO:0006412
Lsi09g00217 447 MobiDBLite consensus disorder prediction 69 99 - -
Lsi09g00217 447 Pfam G-patch domain 52 88 IPR000467 GO:0003676
Lsi09g00217 447 PANTHER BNAA09G11800D PROTEIN 297 352 - -
Lsi09g00217 447 CDD Ribosomal_L22 359 432 IPR001063 GO:0003735|GO:0005840|GO:0006412
Lsi09g00217 447 ProSiteProfiles G-patch domain profile. 50 100 IPR000467 GO:0003676
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00217 K11135 PINX1; Pin2-interacting protein X1 - csv:101213045 535.028
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00101 Lsi-Chr3:1410770 Lsi09g00217 Lsi-Chr9:2259503 1.80E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g43 . . . . . . . Bma14g00598 . . Cma02g01425 . Car02g01194 . . . Cpe05g00361 . . . . . . . . . . . . . . . . Cone6ag0811 Cone9ag0810 . . Chy09g01262 . . . . . . Bpe11g00671 . . . Cmo02g01459 . . . . . . . . . . . . . . Cla01g00227 Cam01g0234 Cec01g0225 Cco01g0237 Clacu01g0229 Cmu01g0222 Cre09g2287 Lsi09g00217 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011517 0 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00217 Lsi_Chr09 FPKM 0.0 0.0 0.0 1.427975 0.0 0.0 1.948957 3.460696 0.0 0.0