Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00218 ATGGAGCCAGCGGGTTTATTCAAATCCTCCTTGAGATTTTTCTCCGATCAAGAACTCTGCTATGCTGATATCCTCACTCCTCAAGAGGTCGTGGCTAGAATTCAAGTAGCCGTCCTCAATTTCCTCAGAATTCTCAGTTCCTCCACTCCAACCATCTCAAATCTTCCTCTGATTGATCGAAGGTCGAGCAATAGCAGAGTGAATCAAGGAATTTTGACGGATGATTCATGGATTTTCCTTTCACACTCCTTTTGTACGAGGTCTTTGATGAGAGCCAATGGTGCTAAGGCCTTTCTTAGAGTGTGGAAGCTGATGGAGATGTGCTCTCAGATTCTGATTCAGGACAAGCGAGTGACACAGAGGGAGCTCTTCTACAAGCTGCTCTGTGATTCACCTGCTTACTTTCCGACTCAGTTGCATGTCAATAGGACAATTCAAGATGTTGTAGCCTTACTTCATTGTAGCCGTTACAGCCTTGGAATTATGGCATCTAGCAGGGGACTTGTCGCCGGCCGTCTACTGTTGCAGGCATGTTGCACTGCCTTTCTTATTGGTTTGGTTATTTACGTTCCACATCACATATATACGCATGAAGTGGAGCCAGAGCAAGAAGTTGTCGACTGCACTGCTTGTGGATCTTCTGGATATGCCATCTCAGGTGACTTGGACTTGCTGCAGAAGTTGACTCTGAAGACTGACGCTCGGTACATAATTGTAATCGAAAAGCATGCGATATTCCAACGGCTGGCAGAGGATCGTGTTTTCAATCACATTCCCAGTATTCTTATCACAGCCAAAGGATATCCAGACATAGCCACAAGGTACTTTCTTCACAGAATTAGCAAAACGTTTCCTCATCTGCCAATATTCGGCCTTGTTGATTGGAACCCTGCGGGATTGGCTATATTATGCACCTTCAAATATGGAAGTATAGGGATGGGCTTGGAGGCATACAGATATGCTTGCAATGTTAAATGGTTGGGAGTACGAGGAGACGATTTACAACTAATACCACAAGAATCTCTGGTCCCACTCAAGCCCCGGGACCTACAAATTGCCAAAAGCTTGATGTCCTCAGAAATATTACAGGAGAATTATCGACAAGAGCTGACCTTAATGGTTGGGAGAGGGCAAAAGGCTGAACTTGAAGCTTTGTACCACAATGGATTTGATTATTTGGAGAAGTTCATAATTTCGAACAATCAACATATATTCAGCAGCATTTTCATGGGGTCTATGCTCGGTGGCCTGCCGTCATATGACCCTCACAACTTCAGCCAACTCCGACCCTCCGATCCTTCAACTCCTTCTAAGATGATTCCTGCGACCTATCATCCAACTCACAGTAGGACCCTTCCCCCACCAGATCAGGTTATAAATACCGAGGCCAAAAATATACTTATACGACACATTTATCGGCATACAGAGGAGAAGGTTAGTAAAAGAAATCTGTGGCAGTCAAGAACGAAGAGACCTGCAGCTGAGCATCCTGTGCCCGAGCACGGAAGCAAGCAACCAAGAGCATCTACTACCAACACTTCAAATTGA 1548 45.03 MEPAGLFKSSLRFFSDQELCYADILTPQEVVARIQVAVLNFLRILSSSTPTISNLPLIDRRSSNSRVNQGILTDDSWIFLSHSFCTRSLMRANGAKAFLRVWKLMEMCSQILIQDKRVTQRELFYKLLCDSPAYFPTQLHVNRTIQDVVALLHCSRYSLGIMASSRGLVAGRLLLQACCTAFLIGLVIYVPHHIYTHEVEPEQEVVDCTACGSSGYAISGDLDLLQKLTLKTDARYIIVIEKHAIFQRLAEDRVFNHIPSILITAKGYPDIATRYFLHRISKTFPHLPIFGLVDWNPAGLAILCTFKYGSIGMGLEAYRYACNVKWLGVRGDDLQLIPQESLVPLKPRDLQIAKSLMSSEILQENYRQELTLMVGRGQKAELEALYHNGFDYLEKFIISNNQHIFSSIFMGSMLGGLPSYDPHNFSQLRPSDPSTPSKMIPATYHPTHSRTLPPPDQVINTEAKNILIRHIYRHTEEKVSKRNLWQSRTKRPAAEHPVPEHGSKQPRASTTNTSN 515
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2274017 2284745 + Lsi09G002180.1 Lsi09g00218 669831

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00218 515 PANTHER MEIOTIC RECOMBINATION PROTEIN SPO11 16 399 - -
Lsi09g00218 515 Gene3D - 191 402 - -
Lsi09g00218 515 PANTHER MEIOTIC RECOMBINATION PROTEIN SPO11 16 399 IPR002815 GO:0003677|GO:0003918|GO:0005694
Lsi09g00218 515 MobiDBLite consensus disorder prediction 478 515 - -
Lsi09g00218 515 Pfam Type IIB DNA topoisomerase 96 161 IPR013049 GO:0003677|GO:0003824|GO:0005524|GO:0005694|GO:0006259
Lsi09g00218 515 Pfam Det1 complexing ubiquitin ligase 412 476 IPR018276 -
Lsi09g00218 515 CDD TOPRIM_TopoIIB_SPO 235 392 IPR034136 -
Lsi09g00218 515 Gene3D - 18 164 IPR036388 -
Lsi09g00218 515 SUPERFAMILY DNA topoisomerase IV, alpha subunit 95 398 IPR036078 GO:0003677|GO:0005694
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00218 K10878 SPO11; meiotic recombination protein SPO11 - csv:101213596 678.707
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01370 Lsi-Chr1:11902517 Lsi09g00218 Lsi-Chr9:2274017 2.14E-50 dispersed
Lsi02g01841 Lsi-Chr2:24187748 Lsi09g00218 Lsi-Chr9:2274017 5.00E-22 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g42 . . . . . . . . . . Cma02g01426 Cma15g01253 . Car15g01130 . . Cpe05g00360 . . . . . . . . . . . . . . Cone8ag0277 Cone12ag0284 . . . Csa05g00241 Chy09g01261 . . . . . . Bpe11g00670 . . . Cmo02g01460 Cmo15g01318 . . . . . Cpe13g00132 Bhi12g00316 . . . . . . Cla01g00228 Cam01g0235 Cec01g0226 Cco01g0238 Clacu01g0230 Cmu01g0223 Cre09g2286 Lsi09g00218 . . Cme09g01799
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006132 0 6 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 6 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00218 Lsi_Chr09 FPKM 17.734274 19.596439 5.466892 5.853277 9.843091 12.623548 10.516012 11.69664 13.2244 10.530001