Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00223 ATGTCCCCAGTTCGTAGATTCATGATGGCGGCTGCATCGAACTCTCTGTCGCTGAAGCACGGGCTCTCTTTCTACTGCCCGCACTCTGGTTCCTTTTCCAGACCTCAACAGCCTTCTTCTGTTGCCTTCAGAGGCTTCCGGAGAAGCTACGTTGCTGCCTCCACGGATTTCGCCAACGAGAATAGAGAGTTTGTGATCGTTGGTGGTGGAAATGCTGCTGGTTATGCAGCTCGTACTTTCGTCGAGCACGGGATGGCGTATGGACGGCTTTGTATAGTATCTAAGGAGGCATTTGCGCCGTACGAGCGTCCGGCTCTGACGAAAGGTTACTTGTTTCCTCTTGATAAAAAACCAGCTCGCTTGCCTGGGTTTCATACTTGTGTTGGATCTGGTGGGGAAAGGCAAACTCCAGAATGGTACAAGGATAAAGGTATTGAGACGTTTTATCAAGATCCAGTTACGGGTGTTGATATAAAAAACCAAACCCTGAGAACTACTTCAGGCAAACTGCTCAAGTATGGAGCCCTTTTAATAGCAACGGGATGTACAGCCTCAAGATTTCCAGATAAGATTGGTGGTGGGCTACCTGGTGTTCACTACATCCGAGACGTTGCAGATGCAGATTCACTAATTTCCTCATTGGAGAAAGCAAAAAAGGTGGTGGTTGTTGGTGGTGGTTATATTGGTATGGAGGTCGCTGCAGCAGCTGTTGGTTGGAAACTTGATACAACATCTCATGAGATGCTGCAAAAACTTGAGCCTAAAATTGAGACGGTATTTTGGTATCTCATTTCTAGTAATGATGAAACATTGGAACTGATAAAATTTCCCTCCAATCTTATAGGGGCAATGTTAGTTAGGAAATATGAAGAATTTTACCAGGAGAATGGTGTCAAATTCTTAAAGGGGGCCTCCATAAAAAATTTGGAAGCTGGTGCAAATGGTCGGGTCACTTCTGTTAGACTTGAGGATGGATCCTCCATTGAAGCAGACACGGTAGTAATAGGCATTGGTGCAAAGCCTGCTGTTGGTCCGTTTGAGCAAGTGGGATTGAATAGCACTGTTGGCGGTATACAGGTTGATGGCCTGTTCAGAACAACAGTTCCAGGAATCTTTGCAGTTGGAGATGTGGCAGCATTCCCATTAAAGCTGTATGATCGTGTAGCTCGGGTCGAACATGTGGATCATGCTCGTCGATCAGCTCAGCATTGTGTCAAAGCATTATTAACTGCTCAAACTCAAACATACGATTATCTTCCATACTTCTACTCAAGGGTGTTTGAATACGAAGGGAGCCCTAGGAAAATATGGTGGCAATTTTTTGGGGATAATGTTGGTGAGACAGTTGAAATTGGGAACTTTGATCCTAAGATTGCTACTTTTTGGATCGATTCTGGTAAATTAAAAGGGGTTCTTCTTGAAAGCGGAAGTCCTGAGGAATTTGAACTTCTTCCTAAACTCGCAAGGTTCCAGCCTTCGGTTGATAAAGCTAAACTTCAAAATGCATCTTCAGTCGAGGAAGCACTGGATATTGCCCGAGCATCTTTGCAGCAGGTTGGAGCTGCGGTTTAA 1572 44.97 MSPVRRFMMAAASNSLSLKHGLSFYCPHSGSFSRPQQPSSVAFRGFRRSYVAASTDFANENREFVIVGGGNAAGYAARTFVEHGMAYGRLCIVSKEAFAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKDKGIETFYQDPVTGVDIKNQTLRTTSGKLLKYGALLIATGCTASRFPDKIGGGLPGVHYIRDVADADSLISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTSHEMLQKLEPKIETVFWYLISSNDETLELIKFPSNLIGAMLVRKYEEFYQENGVKFLKGASIKNLEAGANGRVTSVRLEDGSSIEADTVVIGIGAKPAVGPFEQVGLNSTVGGIQVDGLFRTTVPGIFAVGDVAAFPLKLYDRVARVEHVDHARRSAQHCVKALLTAQTQTYDYLPYFYSRVFEYEGSPRKIWWQFFGDNVGETVEIGNFDPKIATFWIDSGKLKGVLLESGSPEEFELLPKLARFQPSVDKAKLQNASSVEEALDIARASLQQVGAAV 523
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2309862 2316731 - Lsi09G002230.1 Lsi09g00223 669836

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00223 523 Pfam Pyridine nucleotide-disulphide oxidoreductase 64 401 IPR023753 GO:0016491
Lsi09g00223 523 SUPERFAMILY FAD/NAD(P)-binding domain 63 429 IPR036188 -
Lsi09g00223 523 Gene3D - 421 508 IPR016156 GO:0016491|GO:0050660
Lsi09g00223 523 Gene3D - 186 337 IPR036188 -
Lsi09g00223 523 PRINTS FAD-dependent pyridine nucleotide reductase signature 173 191 - -
Lsi09g00223 523 PRINTS FAD-dependent pyridine nucleotide reductase signature 330 346 - -
Lsi09g00223 523 PRINTS FAD-dependent pyridine nucleotide reductase signature 65 84 - -
Lsi09g00223 523 PRINTS FAD-dependent pyridine nucleotide reductase signature 219 237 - -
Lsi09g00223 523 PRINTS FAD-dependent pyridine nucleotide reductase signature 356 378 - -
Lsi09g00223 523 PRINTS Pyridine nucleotide disulphide reductase class-I signature 63 85 - -
Lsi09g00223 523 PRINTS Pyridine nucleotide disulphide reductase class-I signature 219 244 - -
Lsi09g00223 523 PRINTS Pyridine nucleotide disulphide reductase class-I signature 371 378 - -
Lsi09g00223 523 PANTHER MONODEHYDROASCORBATE REDUCTASE, CHLOROPLASTIC/MITOCHONDRIAL 280 518 - -
Lsi09g00223 523 PANTHER MONODEHYDROASCORBATE REDUCTASE, CHLOROPLASTIC/MITOCHONDRIAL 12 244 - -
Lsi09g00223 523 PANTHER APOPTOSIS-INDUCING FACTOR 1 12 244 - -
Lsi09g00223 523 PANTHER APOPTOSIS-INDUCING FACTOR 1 280 518 - -
Lsi09g00223 523 Gene3D - 65 403 IPR036188 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00223 K08232 E1.6.5.4; monodehydroascorbate reductase (NADH) [EC:1.6.5.4] - csv:101214011 890.952
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00690 Lsi-Chr5:9181113 Lsi09g00223 Lsi-Chr9:2309862 5.44E-96 dispersed
Lsi09g00223 Lsi-Chr9:2309862 Lsi03g01915 Lsi-Chr3:30500017 5.76E-104 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g38 . . . . . . . Bma14g00599 . . . Cma15g01251 . Car15g01128 . . . . . . . . . . . . . . . . . . . Cone6ag0808 Cone9ag0805 . Csa05g00247 Chy09g01259 . . . . . . Bpe11g00669 . . . . Cmo15g01316 . . . . . Cpe13g00134 Bhi12g00305 . . . . . . Cla01g00231 . Cec01g0229 Cco01g0243 Clacu01g0234 Cmu01g0227 Cre09g2283 Lsi09g00223 . . Cme09g01794
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008344 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00223 Lsi_Chr09 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0