Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00226 ATGGCTACTAAAGAATCGAGCTCTACCACTGCCACTGAGGGCAAGATTAAAGGGGTTCTTACCCATGGTGGCCGATATGTGCAGTATAATGTTTATGGTAACTTGTTTGAGGTTTCGGCTAAGTATGTCCCTCCTTTGCGACCTATTGGTAGAGGTGCTTATGGTCTTGTTTGTGCTGCTGTAAATTCAGAGACACATGAAGAGGTTGCCATCAAGAAAATTGGAAATGCATTTGATAACATAATCGATGCCAAGAGGACATTGAGAGAAATTAAGCTTCTTTGCCACATGGAACATGAAAATATTATTGCTATCAGAGACATCATTAGGCCGCCAAAAAGAGAGGTTTTTAATGATGTGTATATTGTTTATGAATTGATGGACACTGATCTTCATCAAATAATTCGTTCTGACCAACCACTGACAGACGATCATTGCCAGTACTTTTTGTATCAGTTATTGCGTGGGCTGAAATATGTACATTCAGCCAAGGTTCTGCACCGTGATCTAAAGCCGAGCAACCTGCTTCTGAATGCAAATTGCGACCTTAAAATTGGAGACTTTGGATTGGCAAGGACGACTTCTGAAACTGACTTCATGACTGAATATGTGGTTACTCGCTGGTACCGAGCACCAGAATTGCTCCTCAATTGTTCAGAGTACACTGCTGCCATTGATGTTTGGTCTGTGGGATGCATACTTGGTGAGATAATGACCAGAGAACCTCTCTTCCCTGGCAAAGATTATGTTCATCAACTCAGACTTATAACTGAGCTACTTGGATCACCAGATGATGCCAGCCTAGGATTTCTCCGAAGTGATAATGCTCGAAGATATGTCAAGCAGCTTCCACAGTACAGGAAACAACAATTCTCAGCTAGATTTCCCAACGTGTCTCCAGCTGCCCTGGATCTTCTCGAAAAGATGCTCGTATTTGATCCCAACAAACGCATTACAGTGGAGGAGGCACTTTGTCATCCATACTTGCAATCTCTTCACGACATCAACGACGAGCCGGTCTGTGCCAGGCCTTTCAATTTTGATTTCGAGCAACCGTCGTGCACTGAAGAGCATATTAAAGAACTCATCTGGAAAGAATCCGTCAGGTTCAACCCCGACGAATCCGCTAGGAGGACGACTCTTTGCGTTTGA 1152 43.49 MATKESSSTTATEGKIKGVLTHGGRYVQYNVYGNLFEVSAKYVPPLRPIGRGAYGLVCAAVNSETHEEVAIKKIGNAFDNIIDAKRTLREIKLLCHMEHENIIAIRDIIRPPKREVFNDVYIVYELMDTDLHQIIRSDQPLTDDHCQYFLYQLLRGLKYVHSAKVLHRDLKPSNLLLNANCDLKIGDFGLARTTSETDFMTEYVVTRWYRAPELLLNCSEYTAAIDVWSVGCILGEIMTREPLFPGKDYVHQLRLITELLGSPDDASLGFLRSDNARRYVKQLPQYRKQQFSARFPNVSPAALDLLEKMLVFDPNKRITVEEALCHPYLQSLHDINDEPVCARPFNFDFEQPSCTEEHIKELIWKESVRFNPDESARRTTLCV 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2368024 2373033 + Lsi09G002260.1 Lsi09g00226 669839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00226 383 ProSitePatterns MAP kinase signature. 78 181 IPR003527 GO:0004707|GO:0005524|GO:0006468
Lsi09g00226 383 ProSiteProfiles Protein kinase domain profile. 43 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi09g00226 383 ProSitePatterns Serine/Threonine protein kinases active-site signature. 165 177 IPR008271 GO:0004672|GO:0006468
Lsi09g00226 383 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 11-RELATED 18 374 - -
Lsi09g00226 383 Gene3D Transferase(Phosphotransferase) domain 1 127 356 - -
Lsi09g00226 383 SMART serkin_6 43 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi09g00226 383 Pfam Protein kinase domain 47 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi09g00226 383 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 18 374 - -
Lsi09g00226 383 ProSitePatterns Protein kinases ATP-binding region signature. 49 73 IPR017441 GO:0005524
Lsi09g00226 383 CDD STKc_TEY_MAPK 36 372 - -
Lsi09g00226 383 SUPERFAMILY Protein kinase-like (PK-like) 46 337 IPR011009 -
Lsi09g00226 383 Gene3D Phosphorylase Kinase; domain 1 26 366 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01409 Lsi-Chr2:19449133 Lsi09g00226 Lsi-Chr9:2368024 0 dispersed
Lsi09g00226 Lsi-Chr9:2368024 Lsi09g01365 Lsi-Chr9:21696552 2.74E-116 dispersed
Lsi10g01541 Lsi-Chr10:19818071 Lsi09g00226 Lsi-Chr9:2368024 2.00E-109 dispersed
Lsi11g01637 Lsi-Chr11:24708069 Lsi09g00226 Lsi-Chr9:2368024 1.90E-109 dispersed
Lsi07g00244 Lsi-Chr7:2663814 Lsi09g00226 Lsi-Chr9:2368024 3.13E-145 transposed
Lsi08g00877 Lsi-Chr8:17123544 Lsi09g00226 Lsi-Chr9:2368024 0 transposed
Lsi08g01372 Lsi-Chr8:22013371 Lsi09g00226 Lsi-Chr9:2368024 1.60E-153 transposed
Lsi09g00226 Lsi-Chr9:2368024 Lsi09g01590 Lsi-Chr9:24025453 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83875 PF00069 Pkinase 8.30E-71 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00226 - - csv:101214254 773.467