Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00232 ATGGCTGGAGAGCTTTGTGAAGGAGGAGAAAAATCAAACGAGATGGTAGTTGGAGGAGGGTTTTATTACAATTCTTCCAATTCAAATTCAAACAACATCTCAAATCAATTCACAAATCAGATCCAAACCGGGTTTGGTTCCACCACCGAACCCGTGACGGAGACGATGTTCAACGAGTCGAGTGGTGGTGGTGGCGACGACGATGAGTCGTTTCATCAGAATATGATGGTGGTTGGGCCGTGGGGGACGACGACGACGATGGCAACAACGGATTCTTCTTTAAGATGTGTGTTTCCATGTGAACCAAATGAAAGACCAAGCCAAGGCCTTTCTTTGTCTCTTAGTTCCTCTAATCCTTCTTCTATTGGCTTACAATCTTTTGAACTAAGACAACAGCAACAACAACACCAATCAACTTTCCCCATTTTTCACCTTAGAAACTCAAGGTTTTTGGTCCCAACTCAAGAGCTTCTTTATGAGTTTTGTAGCCTTGGCATCAACAATAACATCAATCATTCTTCTTCCTCACCAAAACACAAACATGGCTCTTCTTCTACCAATTTCTCTCTTCAATCACTTGATTTCATGGACTTGCAAAAAAGGAAAACCAAGCTTTTCTCCATGCTTGAAGAGGTTGAAAGAAGGTATAGACATTATTGCGAGCAAATGAAGGCGGTGGTGGCATCGTTCGAAGCGGTGGCGGGCAGTGGGGCGGCGAGGGTGTACTCGGCGTTGGCGTCGAAAGCGATGTCGAGGCATTTTAGAAGCCTAAAAGATGGGATTGTGGGGCAAATTCAAGCCACAAGAAAGGCAATGGGAGAAAAGGATCCAATTGCACCTGGCACTACAAGAGGAGAAACTCCAAGGCTTAGAGTGATTGATCAAGCTTTAAGACAACAAAGAGCTTTCCATCAAATCAGCATCATGGAAAGCCATCCATGGCGCCCTCAACGCGGCCTCCCCGAGCGTTCTGTTTCGGTGTCAAATTGGTTCATTAATGCAAGGGTGAGGCTGTGGAAGCCAATGGTAGAAGAGATGTATTTGGAAGAAACAAAGGAACAAGAGGATGAGATTGACAACAGTTTCAACAACATGAACAACAATGCCAACAACAACTCTTTTGATGGGGTGGCGGATTTCGACGACGACATCGACGGTCATCGGTCGATCGCGACACGATTAGAGGATCAGAAGCCGACTCCTGACCAACTCCTAAGAATAGACTCGGAATGTCTCTCTTCAATCATCTCTAATAACTCGGAGAAGAATGACTCAAGAACGATGAAAACCATTCACAACCACTTCGGGCACCACCTCCACCAAAACCACAACCACACCTTCGGGCGGGTCGTGGGCGATGCATTCGGCACGATAGAGCTTGACTTCTCGTCCTACAACCACCACACTGGTAGCGGTGGAATTACGTACCCTAACAACAACAGCAGCAACAATCAACATTTCAACAACGGCAGCGGAGGAGGCGTGTCGTTGACATTAGGGTTACAACAGCATGCAGCGACCGGGGGGAACGGCAACGGAGGAGTGAGCATCGCCTTCTCTCCAGCAGCGGCGGCCGCAGCACAAAGCTCCCTTTTCTTCACAAGAGATCACATGGAAGAATGTCAACCAGTTCAATATTCCCTTTTAGATGGAGAAACTCAAAATCTTCCTTACAGAAATTTGATGGGTGCTCAATTGCTTCATGATTTGGCTGGATAA 1719 46.54 MAGELCEGGEKSNEMVVGGGFYYNSSNSNSNNISNQFTNQIQTGFGSTTEPVTETMFNESSGGGGDDDESFHQNMMVVGPWGTTTTMATTDSSLRCVFPCEPNERPSQGLSLSLSSSNPSSIGLQSFELRQQQQQHQSTFPIFHLRNSRFLVPTQELLYEFCSLGINNNINHSSSSPKHKHGSSSTNFSLQSLDFMDLQKRKTKLFSMLEEVERRYRHYCEQMKAVVASFEAVAGSGAARVYSALASKAMSRHFRSLKDGIVGQIQATRKAMGEKDPIAPGTTRGETPRLRVIDQALRQQRAFHQISIMESHPWRPQRGLPERSVSVSNWFINARVRLWKPMVEEMYLEETKEQEDEIDNSFNNMNNNANNNSFDGVADFDDDIDGHRSIATRLEDQKPTPDQLLRIDSECLSSIISNNSEKNDSRTMKTIHNHFGHHLHQNHNHTFGRVVGDAFGTIELDFSSYNHHTGSGGITYPNNNSSNNQHFNNGSGGGVSLTLGLQQHAATGGNGNGGVSIAFSPAAAAAAQSSLFFTRDHMEECQPVQYSLLDGETQNLPYRNLMGAQLLHDLAG 572
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2405783 2409877 - Lsi09G002320.1 Lsi09g00232 669845

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00232 572 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 327 515 - -
Lsi09g00232 572 Gene3D - 287 362 - -
Lsi09g00232 572 PANTHER HOMEOBOX PROTEIN BEL1 HOMOLOG 4 327 - -
Lsi09g00232 572 PANTHER HOMEOBOX PROTEIN BEL1 HOMOLOG 327 515 - -
Lsi09g00232 572 Coils Coil 348 368 - -
Lsi09g00232 572 Pfam Associated with HOX 145 261 IPR006563 -
Lsi09g00232 572 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 4 327 - -
Lsi09g00232 572 SMART prehox3 139 263 IPR006563 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00232 - - - cmo:103482774 881.708
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g00232 Lsi-Chr9:2405783 Lsi10g00586 Lsi-Chr10:8505997 2.29E-44 dispersed
Lsi09g00232 Lsi-Chr9:2405783 Lsi10g01137 Lsi-Chr10:15662058 1.13E-55 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g25 . . . . . . . Bma14g00602 . . Cma02g01431 Cma15g01244 Car02g01199 Car15g01122 . . Cpe05g00355 . . . . . . . . . . . . . . Cone8ag0284 Cone12ag0290 Cone6ag0798 Cone9ag0798 . Csa05g00256 Chy09g01251 . . . . . . Bpe11g00665 . . . Cmo02g01465 Cmo15g01310 . . . . . Cpe13g00140 Bhi12g00295 . . . . . . Cla01g00239 Cam01g0245 Cec01g0238 Cco01g0252 Clacu01g0243 Cmu01g0234 Cre09g2275 Lsi09g00232 . . Cme09g01786
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004485 2 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00232 Lsi_Chr09 FPKM 3.892843 4.409292 4.919238 4.142584 5.417896 6.942911 6.623836 8.61632 6.406597 7.555904