Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00234 ATGGCTGTGCCCGCATCTACAACCACAACTACCACCACCAACGCTTCTACTAATTCCATTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCATTTCCCAATCAACCCACTAAGCTTAAGCGCCGAAAGTGCAGGGATATCACTGTTTCCGCTAAATCTGATTCGTTTTCCTCTTCTTCTTCCAATTCTTCATCTGGGTTTCAGGGATTTTCTCATCGAAAGCTTGATCGCCCTGTGGTTATTGTTTCTTCTGAGAATTCCTGGTGTTGTCCTGCTTCAAAACCCTCTATAACCCCTCCTGCTCTTCCTCTTCCTCCTCCTCCTCCGCCGCCGCCTCCGCCCCCGTCGGAATCTCATCGGAGGGTTACTTCTCCGACACCCACTAAAGGGAATCGAGCATCGGATTCGGTAATATCGCCGTCTGATTCACCGTCTGCTTTCCGGATACGGTTTTCTCCTGGCACTCTTTCTCCGGTTATGGACTTCACCACGTCTTCTTCCGCTGCGGCGTTTAACGGTCATTCTGGATCCAGCCATGACTCTTTCCCTTCCGGGTTCTCGAAGTTCAACTCTGCTCTTACCGCCGGGCTTTTGAACCCAATGTCGCCGCCGCCGTCTACTGATAAAACCCGATCGAGTCCGACCCTTTTCGAAATGATGGCTAGTGAGCCTGATATTCACCCTAGAACTTCTCAGATCCCTCCTCAGATTGCCTCTGTTTCGGTTCATAAGAACCAAATTCCAGTTCAGGACAAGCAGGCCCTGATGATGCAGAGGATTTCTGAGATTTTGGGATCTCGGAGCCCTGGAAATCAGTTCAATGACGCCTCTAGTAGTGATATTAAACTCACATTGAGCTCTAGAGATGGGATCAGTGTTTCGATGAGTGTTCACCGGCAAATTCTTGTTGCTCATAGTCGGTTTTTCGCATTGAAGCTCTCGGAGCGGTGGGCGAAACAACAGCGGTCCCCATCTCCATACATTGTGGAGATTGCTGACTGCGATGATGTTGAAGTGTACATTGAAACCTTGAAATTGATGTATTGTAGAGATCTAAGGAAGAGGCTGATGAAGGAAGATGTTCCCAGAGTTCTTGGAATCCTGAAGGTTTCAGCTGCGATCGGATTTGACGCGGGTGTTTTATCGTGTTTGGAGTACTTAGAAGCCGCCCCATGGGCCGAGGATGAAGAAGAGAAGGTGGCTTCACTCTTATCTGAGCTGCACCTTGAAGGTGTTGCAGCAGGGGAAGTTCTGAAGAGGGTCTCAGTTGAAGTTACTAATGGACCTGAAGATGGCAATGACAATGAAGAAGTGCTGCTCAAGCTTCTACATGTAGTTCTTGAAGGAAAAGATGAGAAGGCGAGGCGGGAGATGAAAGGATTAGTTTCGAAGATGCTTCGTGAGAGTTCATCGCAAAACGATCTTCGAAAAGAATCCTTGTATTCAGCTTGTGATGGTTGTCTGGAGTTGCTTCGCCATCAATTTATGCGAGCAGTAGGGTCGGACTTTCAGGGTGTTGGTGAGATTGCCAAGCAGGCTGATAATTTGCATTGGATTTTAGATATCTTGATTGATAGACAGATAGCTGAAGATTTTTTAAAAACCTGGGCATCTCAATCTGAATTGTCAGCTGTACACTCTAAGGTGCCTGCTGTTCACAGATTCGAGATCAGCCGAGTTACTGCTCGGTTATTCGTTGGAATCGGAAAAGGCCAACTTCTGGCTCCTAAAGATGTGAGATATCAGCTTTTGCAGACCTGGTTGGTGCCGTTTTATGATGATTTCGGTTGGATGAGGAGAGCGTCGAGAGGCCTTGATCGCCACTTGATCGAGGATGGCCTTAGCAATACAATTCTCACTCTACCATTAGCTTGGCAACAAGACATATTGCTAGCTTGGTTCAATAGATTCATGAATTCAGGCGAAGATTGCCCTAATATACAACGAGGGTTCGAAGTCTGGTGGAGAAGAGCCTTCTGGAGACGCAATGGTGAACAGGAACGACCTCGACTGATTCGAATCGCCACCCCATCGACAGAGAATTCGTGA 2046 47.36 MAVPASTTTTTTTNASTNSISSSSSSSSSSFPNQPTKLKRRKCRDITVSAKSDSFSSSSSNSSSGFQGFSHRKLDRPVVIVSSENSWCCPASKPSITPPALPLPPPPPPPPPPPSESHRRVTSPTPTKGNRASDSVISPSDSPSAFRIRFSPGTLSPVMDFTTSSSAAAFNGHSGSSHDSFPSGFSKFNSALTAGLLNPMSPPPSTDKTRSSPTLFEMMASEPDIHPRTSQIPPQIASVSVHKNQIPVQDKQALMMQRISEILGSRSPGNQFNDASSSDIKLTLSSRDGISVSMSVHRQILVAHSRFFALKLSERWAKQQRSPSPYIVEIADCDDVEVYIETLKLMYCRDLRKRLMKEDVPRVLGILKVSAAIGFDAGVLSCLEYLEAAPWAEDEEEKVASLLSELHLEGVAAGEVLKRVSVEVTNGPEDGNDNEEVLLKLLHVVLEGKDEKARREMKGLVSKMLRESSSQNDLRKESLYSACDGCLELLRHQFMRAVGSDFQGVGEIAKQADNLHWILDILIDRQIAEDFLKTWASQSELSAVHSKVPAVHRFEISRVTARLFVGIGKGQLLAPKDVRYQLLQTWLVPFYDDFGWMRRASRGLDRHLIEDGLSNTILTLPLAWQQDILLAWFNRFMNSGEDCPNIQRGFEVWWRRAFWRRNGEQERPRLIRIATPSTENS 681
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2448711 2452354 - Lsi09G002340.1 Lsi09g00234 669847

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00234 681 MobiDBLite consensus disorder prediction 1 73 - -
Lsi09g00234 681 MobiDBLite consensus disorder prediction 1 36 - -
Lsi09g00234 681 ProSiteProfiles BTB domain profile. 278 347 IPR000210 GO:0005515
Lsi09g00234 681 SUPERFAMILY Formin homology 2 domain (FH2 domain) 104 259 - -
Lsi09g00234 681 MobiDBLite consensus disorder prediction 49 69 - -
Lsi09g00234 681 MobiDBLite consensus disorder prediction 95 119 - -
Lsi09g00234 681 MobiDBLite consensus disorder prediction 91 145 - -
Lsi09g00234 681 PANTHER OSJNBA0011J08.25 PROTEIN 36 679 - -
Lsi09g00234 681 Gene3D Potassium Channel Kv1.1; Chain A 255 389 IPR011333 -
Lsi09g00234 681 PANTHER OSJNBA0011J08.25 PROTEIN-RELATED 36 679 IPR038920 -
Lsi09g00234 681 MobiDBLite consensus disorder prediction 120 145 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00234 - - - csv:101215048 1208.74
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01042 Lsi-Chr1:8619376 Lsi09g00234 Lsi-Chr9:2448711 7.23E-115 dispersed
Lsi01g01154 Lsi-Chr1:9712593 Lsi09g00234 Lsi-Chr9:2448711 8.05E-57 dispersed
Lsi09g00234 Lsi-Chr9:2448711 Lsi11g01101 Lsi-Chr11:19164874 2.99E-25 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g22 . . . . . . . Bma14g00603 . . Cma02g01433 Cma15g01243 Car02g01202 Car15g01121 . . Cpe05g00353 . . . . . . . . . . . . . . Cone8ag0286 Cone12ag0291 . . . Csa05g00259 Chy09g01248 . . . . . . Bpe11g00664 . . . Cmo02g01468 Cmo15g01309 . . . . . Cpe13g00141 Bhi12g00292 . . Lac11g2066 Hepe06g1523 . . Cla01g00244 Cam01g0248 Cec01g0241 Cco01g0254 Clacu01g0246 Cmu01g0236 Cre09g2272 Lsi09g00234 . . Cme09g01783
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004050 1 2 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 6 2 1 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00234 Lsi_Chr09 FPKM 1.529063 2.30668 0.0 0.21941 0.183986 0.536782 0.172113 0.0 0.0 0.0