Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi09g00235 | ATGGGCTTCCCTGCAAGCTACACTGAGCTTCTTCTCCCTAAGCTCTTCATCCACGTACTCTCCTTCCTCGGCTTCCTCCGGAAGCTTATCTCCCTCCTCTTCCGCCTCCTTGGCCTTCAAGATTTCCTCGAACCTGACATTCCTTGGTCCAATCACCCCGATTCCTTCCCCACCGGACCTTTCACCGACCTCGATCCTCTCTCCGCCGCCGTTCTCCGGGAGATTCTCCCGGTTGTGAAGTTTTCCGAGCTTCTGGATCCGCCGGAGAGCTGTGCTGTATGTCTCTACGAGTTCGAGGCCGACGATGAGATCCGCCGCCTTGCTAACTGCCGTCACATCTTCCACCGCGGATGCCTCGATCGGTGGATCGGTTACGGTCAGAGAACCTGCCCGCTGTGCCGGACGGTGTTTATTCCGCCCGATTTGCGGAGTGGTGGTTGTAATTTTGACGATAGACTTTGGGAGGATTCGGAAATCTTTGAAGCTCTCCACAGCGATTCTTCATCTTCAAGTCTTCTCGCTGCTGGTTTGTAG | 534 | 55.24 | MGFPASYTELLLPKLFIHVLSFLGFLRKLISLLFRLLGLQDFLEPDIPWSNHPDSFPTGPFTDLDPLSAAVLREILPVVKFSELLDPPESCAVCLYEFEADDEIRRLANCRHIFHRGCLDRWIGYGQRTCPLCRTVFIPPDLRSGGCNFDDRLWEDSEIFEALHSDSSSSSLLAAGL | 177 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 2471688 | 2472221 | + | Lsi09G002350.1 | Lsi09g00235 | 669848 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi09g00235 | 177 | Pfam | Ring finger domain | 90 | 134 | IPR001841 | - | |
| Lsi09g00235 | 177 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 85 | 137 | IPR013083 | - | |
| Lsi09g00235 | 177 | ProSiteProfiles | Zinc finger RING-type profile. | 91 | 134 | IPR001841 | - | |
| Lsi09g00235 | 177 | SMART | ring_2 | 91 | 133 | IPR001841 | - | |
| Lsi09g00235 | 177 | CDD | RING-H2 | 91 | 134 | - | - | |
| Lsi09g00235 | 177 | PANTHER | BRH1 RING FINGER PROTEIN | 1 | 161 | - | - | |
| Lsi09g00235 | 177 | SUPERFAMILY | RING/U-box | 72 | 140 | - | - | |
| Lsi09g00235 | 177 | PANTHER | RING ZINC FINGER PROTEIN-RELATED | 1 | 161 | - | - | |
| Lsi09g00235 | 177 | SMART | ringv_2 | 90 | 134 | IPR011016 | GO:0008270 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi09g00235 | Lsi-Chr9:2471688 | Lsi02g01549 | Lsi-Chr2:21345539 | 1.56E-12 | dispersed | |
| Lsi01g00732 | Lsi-Chr1:5773158 | Lsi09g00235 | Lsi-Chr9:2471688 | 7.94E-16 | transposed | |
| Lsi05g02053 | Lsi-Chr5:27476041 | Lsi09g00235 | Lsi-Chr9:2471688 | 5.56E-43 | wgd | |
| Lsi09g00235 | Lsi-Chr9:2471688 | Lsi09g01587 | Lsi-Chr9:23986061 | 8.35E-52 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi09g00235 | K16281 | - | csv:101215533 | 305.064 |