Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00235 ATGGGCTTCCCTGCAAGCTACACTGAGCTTCTTCTCCCTAAGCTCTTCATCCACGTACTCTCCTTCCTCGGCTTCCTCCGGAAGCTTATCTCCCTCCTCTTCCGCCTCCTTGGCCTTCAAGATTTCCTCGAACCTGACATTCCTTGGTCCAATCACCCCGATTCCTTCCCCACCGGACCTTTCACCGACCTCGATCCTCTCTCCGCCGCCGTTCTCCGGGAGATTCTCCCGGTTGTGAAGTTTTCCGAGCTTCTGGATCCGCCGGAGAGCTGTGCTGTATGTCTCTACGAGTTCGAGGCCGACGATGAGATCCGCCGCCTTGCTAACTGCCGTCACATCTTCCACCGCGGATGCCTCGATCGGTGGATCGGTTACGGTCAGAGAACCTGCCCGCTGTGCCGGACGGTGTTTATTCCGCCCGATTTGCGGAGTGGTGGTTGTAATTTTGACGATAGACTTTGGGAGGATTCGGAAATCTTTGAAGCTCTCCACAGCGATTCTTCATCTTCAAGTCTTCTCGCTGCTGGTTTGTAG 534 55.24 MGFPASYTELLLPKLFIHVLSFLGFLRKLISLLFRLLGLQDFLEPDIPWSNHPDSFPTGPFTDLDPLSAAVLREILPVVKFSELLDPPESCAVCLYEFEADDEIRRLANCRHIFHRGCLDRWIGYGQRTCPLCRTVFIPPDLRSGGCNFDDRLWEDSEIFEALHSDSSSSSLLAAGL 177
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
9 2471688 2472221 + Lsi09G002350.1 Lsi09g00235 669848
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00235 177 Pfam Ring finger domain 90 134 IPR001841 -
Lsi09g00235 177 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 85 137 IPR013083 -
Lsi09g00235 177 ProSiteProfiles Zinc finger RING-type profile. 91 134 IPR001841 -
Lsi09g00235 177 SMART ring_2 91 133 IPR001841 -
Lsi09g00235 177 CDD RING-H2 91 134 - -
Lsi09g00235 177 PANTHER BRH1 RING FINGER PROTEIN 1 161 - -
Lsi09g00235 177 SUPERFAMILY RING/U-box 72 140 - -
Lsi09g00235 177 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 161 - -
Lsi09g00235 177 SMART ringv_2 90 134 IPR011016 GO:0008270
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g00235 Lsi-Chr9:2471688 Lsi02g01549 Lsi-Chr2:21345539 1.56E-12 dispersed
Lsi01g00732 Lsi-Chr1:5773158 Lsi09g00235 Lsi-Chr9:2471688 7.94E-16 transposed
Lsi05g02053 Lsi-Chr5:27476041 Lsi09g00235 Lsi-Chr9:2471688 5.56E-43 wgd
Lsi09g00235 Lsi-Chr9:2471688 Lsi09g01587 Lsi-Chr9:23986061 8.35E-52 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00235 K16281 - csv:101215533 305.064