Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00237 ATGGGACACGGTGACAAAGGAAGACCCAGCAAAAAACCTAAATTCGGCAAGGAGGATTACAGGAAAGCTTTTGAAGAAGAAGATGCCTACCATCTTGATGATCATGACGACGATGATCGCAATGGTGATAAAGAAGGAGGCAAGAGAGATTTCAGCAAATTGGAGTTAAAACCTGACCATGCTAATCGGCCCTTATGGGCTTGTGCTGATGGTCGGATATTCCTTGAAACTTTCTCGCCCTTGTACAAACAGGCATATGATTTCCTTATTGCCATCGCGGAACCAGTTTGCAGGCCAGAATCAATGCACGAGTACAATCTCACTCCACATTCTTTGTATGCTGCGGTTTCTGTTGGTTTGGAGACAGAAACAATTATCGCGGTTCTGAGTAAGTTGTCTAAGGCCAAACTTCCCAAGGAGATGATCGATTTCATTTATGCTTCTACTACCAACTATGGCAAGGTGTTGCAGAAATTGCTGAAGGATGAGGTTATAGGCAGAGCCAGAGTCATTCCCGAGGATTCTCGTGGAAATGGTGAGTTTACAATTAGCAAAACAGCGGGTGAACTTGGCAGTCGCCATGAAGGATTGCTTAATGAAGCAGAAGCTGCAGCTGCAGCTGAGGAAAGAGAAACTCATTCATTTGAAATTGACCCATCACAAGTTGAAAATGTTAAACAACGCTGCCTGCCCAATGCCTTAAATTATCCCATGTTGGAAGAGTATGACTTCAGAAACGACACTATCAATCCAGACTTGGATATGGAACTGAAACCACAGGCTCAGCCTAGGCCGTATCAGGAAAAGAGTCTTAGCAAAATGTTTGGAAATGGTAGAGCAAGATCTGGCATTATTGTACTTCCTTGTGGAGCCGGGAAGTCTCTGGTTGGTGTTTCTGCAGCCAGTCGTATCCGGAAAAGTTGTCTTTGTTTAGCTACAAATGCTGTATCAGTGGATCAGTGGGCTTTTCAGTTTAAATTGTGGTCTACCATTCGAGATGATCAAATTTGTCGGTTCACGTCAGATAGTAAAGAAAGATTTCGAGGAAATGCTGGGGTGGTTGTTACAACCTATAACATGGTTGCTTTCGGTGGTAAAAGATCTGAAGAATCTGAAAAGATCATTGAAGAAATCAGAAACAGAGAATGGGGACTACTTCTCATGGACGAGGTGCACGTGGTTCCTGCTCACATGTTTCGTAAGGTTATCAGCCTGACTAAGTCTCACTGCAAGCTCGGGCTCACTGCCACACTTGTGAGAGAAGACGAAAGAATTACAGATTTAAATTTTCTTATTGGTCCCAAGTTGTATGAAGCGAACTGGTTGGATCTTGTGAAAGGAGGATTCATTGCAAATGTGCAGTGTGCTGAAGTTTGGTGTCCTATGACAAAGGAGTTTTTTGCTGAATATCTGAAGAAAGAAAACTCAAAGAAAAAGCAGGCTCTTTATGTAATGAACCCTAATAAGTTCAGGGCGTGTGAGTTTCTCATACGGTTTCATGAACAGCAGCGTGGGGATAAGATAATTGTTTTTGCTGACAATCTTTTTGCACTTACGGAGTATGCAATGAAGCTCCGTAAACCTATGATCTATGGTGCGACAAGTCATATTGAGAGGACAAAAATTCTTGAAGCATTCAAAACTAGTCGTGATGTGAATACCGTTTTTCTTTCAAAGGTGGGTGATAACTCTATCGATATTCCTGAGGCAAATGTGATTATTCAGATATCATCACATGCGGGTTCAAGACGTCAAGAAGCCCAACGTCTGGGGCGTATTCTTAGGGCCAAGGGTAAACATCAGGACAGGATGGCTGGGGGTAAAGAGGAGTATAATGCTTTTTTCTATTCACTCGTTTCTACTGATACACAGGAAATGTACTATTCAACTAAACGACAACAGTTTTTAATCGATCAAGGTTATAGCTTTAAGGTACTGAATGCAGGCGATGATATGGTAGGATTGGAGCAGTTAGAAGATGATGCAGACCAAATTGCACTCGATAAGGCTCGGCGTTCAATGGGATCCATGAGTGCAATGTCAGGAGCAAATGGCATGGTTTATATGGAGTACAGCACTGGACGAAAACTCGCGGGTCAAGGGCAGCTTAAGAGCAAGCCAAAAGACCCGGCAAAGAGACATCATCTGTTCAAAAAGCGGTTTGCCTGA 2169 42.92 MGHGDKGRPSKKPKFGKEDYRKAFEEEDAYHLDDHDDDDRNGDKEGGKRDFSKLELKPDHANRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSVGLETETIIAVLSKLSKAKLPKEMIDFIYASTTNYGKVLQKLLKDEVIGRARVIPEDSRGNGEFTISKTAGELGSRHEGLLNEAEAAAAAEERETHSFEIDPSQVENVKQRCLPNALNYPMLEEYDFRNDTINPDLDMELKPQAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAASRIRKSCLCLATNAVSVDQWAFQFKLWSTIRDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFAEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHIERTKILEAFKTSRDVNTVFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKHQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKVLNAGDDMVGLEQLEDDADQIALDKARRSMGSMSAMSGANGMVYMEYSTGRKLAGQGQLKSKPKDPAKRHHLFKKRFA 722
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2505345 2512917 - Lsi09G002370.1 Lsi09g00237 669850

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00237 722 Gene3D - 445 675 IPR027417 -
Lsi09g00237 722 MobiDBLite consensus disorder prediction 708 722 - -
Lsi09g00237 722 PANTHER DNA REPAIR HELICASE XPB1-LIKE 4 646 - -
Lsi09g00237 722 CDD SF2_C_XPB 455 619 - -
Lsi09g00237 722 PANTHER RAD25/XP-B DNA REPAIR HELICASE 644 721 - -
Lsi09g00237 722 CDD DEXHc_XPB 255 424 - -
Lsi09g00237 722 Pfam Helicase conserved C-terminal domain 65 155 IPR032830 -
Lsi09g00237 722 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 372 652 IPR027417 -
Lsi09g00237 722 MobiDBLite consensus disorder prediction 699 722 - -
Lsi09g00237 722 SMART ultradead3 259 440 IPR014001 -
Lsi09g00237 722 PANTHER RAD25/XP-B DNA REPAIR HELICASE 4 646 - -
Lsi09g00237 722 MobiDBLite consensus disorder prediction 26 52 - -
Lsi09g00237 722 Pfam ERCC3/RAD25/XPB C-terminal helicase 444 657 IPR032438 -
Lsi09g00237 722 Pfam Type III restriction enzyme, res subunit 262 418 IPR006935 GO:0003677|GO:0005524|GO:0016787
Lsi09g00237 722 TIGRFAM rad25: DNA repair helicase rad25 201 646 IPR001161 GO:0003678|GO:0006289|GO:0006367
Lsi09g00237 722 Gene3D - 253 444 IPR027417 -
Lsi09g00237 722 PANTHER DNA REPAIR HELICASE XPB1-LIKE 644 721 - -
Lsi09g00237 722 SMART helicmild6 519 597 IPR001650 -
Lsi09g00237 722 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 274 436 IPR014001 -
Lsi09g00237 722 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 491 637 IPR001650 -
Lsi09g00237 722 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 222 438 IPR027417 -
Lsi09g00237 722 PRINTS Xeroderma pigmentosum group B protein signature 553 571 - -
Lsi09g00237 722 PRINTS Xeroderma pigmentosum group B protein signature 572 597 - -
Lsi09g00237 722 PRINTS Xeroderma pigmentosum group B protein signature 382 402 - -
Lsi09g00237 722 PRINTS Xeroderma pigmentosum group B protein signature 448 470 - -
Lsi09g00237 722 PRINTS Xeroderma pigmentosum group B protein signature 63 83 - -
Lsi09g00237 722 PRINTS Xeroderma pigmentosum group B protein signature 506 528 - -
Lsi09g00237 722 PRINTS Xeroderma pigmentosum group B protein signature 609 632 - -
Lsi09g00237 722 PRINTS Xeroderma pigmentosum group B protein signature 275 297 - -
Lsi09g00237 722 PRINTS Xeroderma pigmentosum group B protein signature 244 270 - -
Lsi09g00237 722 PRINTS Xeroderma pigmentosum group B protein signature 486 501 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00237 K10843 ERCC3, XPB; DNA excision repair protein ERCC-3 [EC:5.6.2.4] - csv:101215293 1347.41
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g19 . . . . . . . Bma14g00606 . . . Cma15g01241 . Car15g01118 . . . . . . . . . . . . . . . . . Cone8ag0288 Cone12ag0294 . . . Csa05g00262 Chy09g01245 . . . . . . Bpe11g00661 . . . . Cmo15g01306 . . . . . Cpe13g00144 Bhi12g00288 . . Lac11g2069 Hepe06g1526 . Lcy12g1631 Cla01g00247 Cam01g0251 Cec01g0244 Cco01g0257 Clacu01g0249 Cmu01g0239 Cre09g2269 Lsi09g00237 . . Cme09g01780
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011686 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00237 Lsi_Chr09 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0