Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00238 ATGAACCGGCAACCGCCTCGGCTTTTAAATGGTGAATCCGCGTTCGCGCTCCGGCTGTTCGCCGAATTAACAGACTGCAAAGATAAAAGAAAAGATGCTGTTAAAAAGGTCATTGCTGCAATGACTGTTGGGAAGGATGTGTCGTCACTTTTCACAGACGTTGTAAATTGCATGCAGACCGAAAATTTAGAGCTGAAAAAGCTGGTCTACTTGTATCTAATAAATTATGCCAAAAGCCAGCCTGATCTAGCCATTCTTGCCGTGAACACATTTGTGAAAGATTCACAAGATCCAAATCCTTTAATTCGTGCTTTGGCCGTAAGGACAATGGGATGCATTCGCGTGGATAAAATTACAGAATACTTGTGTGATCCTCTTCAGAGATGCCTTAAGGATGATGACCCTTATGTCCGCAAGACAGCTGCCATCTGTGTTGCCAAACTTTTTGATATAAATGCTGAGTTAGTTGAGGACAGGGGTTTTTTGGAATCTCTCAAAGACTTAATATCAGACAATAATCCAATGGTTGTTGCAAATGCTGTGGCTGCTCTTGCCGAGATACAGGAGAATAGTAGCAGACCCATCTTTGAGATCACGAGTCACACGCTGTCAAAACTTCTCACAGCTTTGAACGAGTGTACTGAGTGGGGTCAAGTTTTTATACTGGACGCACTTTCTAGATACAAAGCAGAGGATGCTCGCGAAGCAGAGAATATAATGGAGAGAGTTACTCCACGTCTACAACATGCTAATTGTGCTGTTGTTCTGTCAGCTGTGAAGATGATTCTTCAACAAATGGAACTGATCACTAGCACTGATGTAGTTCGAAATCTTTGCAAAAAGATGGCTCCTCCTCTTGTTACCTTGCTTTCGGCAGAACCCGAGATACAATATGTTGCATTGCGAAATATTAACCTTATAGTACAAAAACGCCCTACTATTCTTGCACATGAAATTAAGGTTTTCTTCTGTAAGTACAATGATCCAATCTATGTAAAGATGGAGAAATTAGAGATCATGATTAAGCTTGCATCTGACAGGAACATAGACCAGGTTCTGCTGGAGTTCAAGGAGTATGCCACTGAAGTAGATGTAGATTTTGTAAGAAAAGCTGTCCGTGCAATTGGTAGGTGTGCAATCAAGCTAGAGAGAGCTGCTGAACGATGCATAAGTGTGTTACTCGAGCTGATCAAAATTAAAGTGAACTACGTGGTTCAAGAGGCTATTATAGTCATCAAGGATATTTTCAGAAGATATCCTAACACGTACGAGTCCATCATTGCAACACTCTGTGAAAGCTTAGACACGTTGGATGAGCCAGAAGCCAAGGCATCAATGATCTGGATTATTGGAGAATACGCAGAGAGAATTGACAATGCAGATGAACTTCTTGAAAGCTTCTTGGAGAATTTCCCTGAGGAACCTGCACAAGTCCAGCTTCAATTGCTGACTGCAACTGTCAAACTTTTTCTTAAGAAGCCAACTGAGGGACCACAGCAGATGATTCAGGCTGTTCTGAACAATGCTACTGTGGAGACGGACAATCCTGATTTGCGGGACCGTGCTTATATATATTGGCGACTCCTATCAACTGATCCAGAGGCAGCTAAGGATGTGGTTCTTGCCGAGAAGCCTGTAATTGGTGATGATTCAAATCTGCTCGATTCCTCGCTCCTAGATGAGCTCCTTGCCAATATTGCCACATTATCCTCTGTATATCACAAGCCCCCTGAAGCATTTGTGACCCGTACGAAGACTGTTCAGAGAACAGAAGAAGAAGATTATCCTGAAGGAAGTGATGCAGGGTATTCAGAATCTCCTTCCCAGGCGGGTGGTGCATCGCCTCCAACTACTTCAGACGCACCTTATTCAGTACAAAAGAATCCGGCCCCTGGCTCAGCTTCCCCTCCACCTCCAGCTTCAGTTCCGGATTTACTTGGTGACCTGATTGGATTGGATAATAGTGCTACTGGCCCTGTTGATCAGCCTGCTGCTCCTGCTGGCCCTCCCTTGCCTATCCTGCTACCAGCATCAGCTGGTCAAGGCTTACAAATTAGTGCACAGCTCACACGACTGGATGGTCAAGTATTTTACAGTTTATTGTTCGAGAACAATACGCAGATTACATTGGATGGGTTCATGATCCAGTTTAACAAGAATACCTTTGGCCTTGCAGCTGCAGGACCCTTACAGGTTCAACCGTTGCAACCTGGGTCAGCTGTAAATACTCTCCTGCCTATGGTGGTGTTCCAAAATATGTCTCAAGGTCCCCCAAGTTCACTTTTGCAGGTAGCCGTGAAGAACAATCAACAACCAGTGTGGTACTTCAATGATAAAATCCCAATGCACGTTTTCTTCACCGACGATGGGAGGATGGAACGTGCAAACTTTCTTGAGACTTGGAGGTCCCTCCCAGATTCAAACGAAGTTTCCAAAGACTTCCCTGCCATTGTTCTAACCAATGTTGAGGCTGTTCTGGAACGACTCGCTACTACAAACATGTTCTTCATTGCCAAAAGGAAGCACGCAAACCAGGACGTTTTCTACTTCTCAACTAAAATTCCCAGAGGAATCCCTTTCTTGATTGAACTGACTACGGTTGTCGGAAGCCCCGGCCTGAAATGCGCCGTCAAAACCCCGAACATTGACATGGCACCACTCTTTTTTGAATCCTTGGAGACTCTTCTCAAGGAATGA 2697 44.31 MNRQPPRLLNGESAFALRLFAELTDCKDKRKDAVKKVIAAMTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLFDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIQENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAEDAREAENIMERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLSAEPEIQYVALRNINLIVQKRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNADELLESFLENFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQAVLNNATVETDNPDLRDRAYIYWRLLSTDPEAAKDVVLAEKPVIGDDSNLLDSSLLDELLANIATLSSVYHKPPEAFVTRTKTVQRTEEEDYPEGSDAGYSESPSQAGGASPPTTSDAPYSVQKNPAPGSASPPPPASVPDLLGDLIGLDNSATGPVDQPAAPAGPPLPILLPASAGQGLQISAQLTRLDGQVFYSLLFENNTQITLDGFMIQFNKNTFGLAAAGPLQVQPLQPGSAVNTLLPMVVFQNMSQGPPSSLLQVAVKNNQQPVWYFNDKIPMHVFFTDDGRMERANFLETWRSLPDSNEVSKDFPAIVLTNVEAVLERLATTNMFFIAKRKHANQDVFYFSTKIPRGIPFLIELTTVVGSPGLKCAVKTPNIDMAPLFFESLETLLKE 898
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2512831 2523158 + Lsi09G002380.1 Lsi09g00238 669851

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00238 898 SMART B2_adapt_app_C_2 786 897 IPR015151 GO:0006886|GO:0016192|GO:0030131
Lsi09g00238 898 SMART alpha_adaptinc2 663 777 IPR008152 GO:0006886|GO:0016192
Lsi09g00238 898 PANTHER BETA-ADAPTIN-LIKE PROTEIN B 25 896 - -
Lsi09g00238 898 MobiDBLite consensus disorder prediction 583 672 - -
Lsi09g00238 898 PANTHER ADAPTOR COMPLEX SUBUNIT BETA FAMILY MEMBER 25 896 IPR026739 GO:0016192
Lsi09g00238 898 SUPERFAMILY ARM repeat 28 579 IPR016024 -
Lsi09g00238 898 Gene3D - 668 781 IPR013037 GO:0006886|GO:0016192
Lsi09g00238 898 Pfam Beta2-adaptin appendage, C-terminal sub-domain 788 896 IPR015151 GO:0006886|GO:0016192|GO:0030131
Lsi09g00238 898 Gene3D - 782 898 IPR012295 -
Lsi09g00238 898 SUPERFAMILY Subdomain of clathrin and coatomer appendage domain 785 897 IPR009028 GO:0006886|GO:0016192|GO:0030117
Lsi09g00238 898 SUPERFAMILY Clathrin adaptor appendage domain 669 783 IPR013041 -
Lsi09g00238 898 MobiDBLite consensus disorder prediction 602 630 - -
Lsi09g00238 898 Pfam Adaptin C-terminal domain 681 776 IPR008152 GO:0006886|GO:0016192
Lsi09g00238 898 Pfam Adaptin N terminal region 23 531 IPR002553 GO:0006886|GO:0016192|GO:0030117
Lsi09g00238 898 Gene3D - 17 590 IPR011989 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00238 K12392 AP1B1; AP-1 complex subunit beta-1 - csv:101215532 1625.14
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g00238 Lsi-Chr9:2512831 Lsi11g01425 Lsi-Chr11:22813440 0 dispersed
Lsi09g00238 Lsi-Chr9:2512831 Lsi10g00358 Lsi-Chr10:5583232 8.09E-16 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g18 . . . . . . . . . . Cma02g01437 Cma15g01240 Car02g01205 Car15g01117 . . Cpe05g00350 . . . . . . . . . . . . . . Cone8ag0289 Cone12ag0295 Cone6ag0794 . . Csa05g00264 Chy09g01244 . . Blo19g00330 . . . . . . . Cmo02g01471 Cmo15g01305 . . . . . Cpe13g00145 Bhi12g00287 . . Lac11g2070 Hepe06g1527 . Lcy12g1632 Cla01g00248 Cam01g0252 Cec01g0245 Cco01g0258 Clacu01g0250 Cmu01g0240 Cre09g2268 Lsi09g00238 . . Cme09g01779
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002730 1 2 1 1 1 2 3 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 4 1 57
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00238 Lsi_Chr09 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0