Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00241 ATGTCTTCTCCAAGCAAGCGACGTGAAATGGATTTGATGAAACTGATGATGAGTGATTACAAGGTGGAAACAATCAATGATAGCATGCAAGAGTTCTATGTGGACTTCCATGGACCTAAAGACAGTATTTATCAAGGTGGTGTGTGGAGGATTAGGGTGGAGTTGCCAGATGCTTATCCTTACAAGTCACCTTCAATTGGCTTTGTCAACAAAATTTATCATCCAAATGTTGATGAAATGTCGGGCTCAGTCTGTTTGGATGTTATCAACCAGACATGGAGCCCAATGTTTGACCTTGTAAATGTTTTCGAAGTGTTTCTTCCACAACTTCTCCTGTATCCCAACCCTTCGGATCCGTTGAATGGAGAAGCTGCTGCAGTAATGATGCGTGATCGCACTGCATATGAGCAAAGAGTAAAAGAATACTGTGAGAAATATGCAAAGCCAGAGGATATTGGTGCTGTTGCTGAGGAGAAATCTAGTGATGAGGAGCTGAGTGAAGATGATTATTCCTCAAGTGATGAGGCCATGGCAGGCCAAGCTGATGCTTGA 552 42.75 MSSPSKRREMDLMKLMMSDYKVETINDSMQEFYVDFHGPKDSIYQGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAAVMMRDRTAYEQRVKEYCEKYAKPEDIGAVAEEKSSDEELSEDDYSSSDEAMAGQADA 183
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2537992 2540778 + Lsi09G002410.1 Lsi09g00241 669854

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00241 183 Pfam Ubiquitin-conjugating enzyme 10 142 IPR000608 -
Lsi09g00241 183 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 73 89 IPR023313 -
Lsi09g00241 183 SMART ubc_7 4 148 - -
Lsi09g00241 183 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 3 182 - -
Lsi09g00241 183 MobiDBLite consensus disorder prediction 153 183 - -
Lsi09g00241 183 CDD UBCc 7 143 IPR000608 -
Lsi09g00241 183 PANTHER UBIQUITIN-CONJUGATING ENZYME E2-23 KDA 3 182 - -
Lsi09g00241 183 Gene3D Ubiquitin Conjugating Enzyme 1 160 IPR016135 -
Lsi09g00241 183 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 148 IPR000608 -
Lsi09g00241 183 SUPERFAMILY UBC-like 4 148 IPR016135 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00241 K10576 UBE2H, UBC8; ubiquitin-conjugating enzyme E2 H [EC:2.3.2.23] - csv:101216007 348.206
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00356 Lsi-Chr2:3040865 Lsi09g00241 Lsi-Chr9:2537992 3.16E-102 dispersed
Lsi06g01536 Lsi-Chr6:25731757 Lsi09g00241 Lsi-Chr9:2537992 6.48E-77 dispersed
Lsi09g00241 Lsi-Chr9:2537992 Lsi09g00193 Lsi-Chr9:2006813 9.92E-27 dispersed
Lsi05g02049 Lsi-Chr5:27440123 Lsi09g00241 Lsi-Chr9:2537992 5.53E-100 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g1 . . . Bda08g00515 . Bpe07g00104 . Bma14g00608 . Cmo16g00658 Cma02g01438 . Car02g01208 . . . Cpe05g00646 . . . . . . . Cla07g00786 Cam07g0848 Cec07g0901 Cco07g0883 Clacu07g0823 Cmu07g0826 Cre07g1184 . . . . . Csa05g00266 . . . . Bda07g00484 . . Bpe11g00661 . Bma12g00073 . Cmo02g01473 Cmo15g01132 . Cma16g00602 Car06g00910 . . Cpe13g00146 Bhi12g00184 . . . . . . Cla01g00250 Cam01g0255 Cec01g0247 Cco01g0261 Clacu01g0253 Cmu01g0243 Cre09g2266 Lsi09g00241 . Chy07g01225 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000389 3 10 1 5 4 3 5 3 3 3 3 3 5 4 4 4 3 4 5 3 4 3 3 4 4 3 4 10 11 3 127
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00241 Lsi_Chr09 FPKM 0.30839 0.0 0.238236 0.0 0.0 0.0 0.0 0.0 0.0 0.0