Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00243 ATGGGTACACCTAAAGAGATATTTTTGAAAGATTACAAGATGCCTGATTACTATTTTGACACGGTCGATTTGAAATTTTTGTTGGGTGAGGAGAAAACAATCGTCAATTCAAGAATAACAGTGTTCCCTAGAGTTGAAGGTACTCGGAGTGGCAACCTTTGTAATATGCTGTTAAGCGTTGAGGAAGATTATGTTCTGGACTCCCGCCATTTGACAATCCTATCACCGCCAACTGGTTCTTTTACTTTGGAAATTGTCAATGAGATATGTCCTCAGAACAACACATCTTTAGAGGGACTCTATAAATCAACTGGAAATTTCTGCACACAATGTGAAGCTGAAGGTTTCCGGAAGATCACATTTTACCAGGACCGTCCAGATATAATGGCAAAGTACACATGTCGCATAGAAGCCGATAAGTCATTGTACCCAGTGCTGCTGTCTAATGGAAATCTTATAGATCAGGGTGATTTAGAGGGTGGAAAACATTATGCCCTTTGGGAGGATCCCTTTAAGAAACCCTGCTACTTGTTTGCTTTAGTAGCTGGCAAGTTGGTTAGCAGAGACGATGTTTTTATTACTCGTAGGAAAATCTCCTTGAAGATATGGACCCCAGCTGAAGACCTACCCAAGACTGAGCATGCCATGTATTCTTTGAAGGCAGCTATGAAATGGGATGAAGATGTTTTTGGACTAGAATATGATCTGGATCTCTTCAACATTGTGGCTGTTCCAGATTTCAACATGGGAGCCATGGAAAACAAGAGTCTGAATATTTTCAATTCAAAACTTGTCTTGGCATCTCCGGAGACCGCTTCTGATGCAGATTATGCTGCCATATTAGGAGTGATTGGCCATGAGTATTTCCACAACTGGACTGGCAACAGGGTGACGTGTCGTGATTGGTTCCAGCTGAGTCTGAAGGAAGGCCTTACTGTTTTCCGTGATCAGGAATTTTCATCTGACATGGGAAGTCGTGCTGTGAAAAGAATTGCTGATGTTTCAAGACTTAGAAACTATCAGTTTCCACAGGATGCTGGTCCCATGGCTCATCCAGTTCGACCACATTCCTATATCAAGGAAAGTGTCATTCTCTATGGGTTTGCACGAAATTCTAGCTATTTGTTTGTTCTTTCCTTTCCATTTTTGGTTTCTTTTTCTTCAATTTTTACTGATGTCTATGAGAAGGTTTGTCATTTAAGCATAATGTTGCCCCTTTTTTTCTGGGTCAAGAAAGGTGCTGAAGTCGTGAGGATGTACAAGACCTTATTGGGAAGTCAAGGATTTAGAAAAGGCATGGATCTTTACTTTAAGAGACATGATGGCCAAGCTGTACTCTCAAGCTGGGACCCCTCAAGTCAAAGTAACATCATCTTACAATTCCGATGGTCGTACATTTACTCTGAAGTTCAGTCATTTACAAGTTATGCTAAGTGGTTAAAAATCCACAGGCAAGATGTCCCACCAACTCCTGGGCAGTCAGTTAAAGAGCCAATGTTTATACCTGTTGCTCTTGGTTTGCTAGACTCATCTGGTAATAATTTGCGTCTTTCCTCCATATATCATGATGGGGTGTTGCAGTCTGTATCTGAAAATGATCAGCCAGTCTACTCCACAGTCCTCAGGCTGACTAAGAAAGAAGAAGAGTTTGTCTTCTCGGATATACCTGAGCGGCCAGTTCCTTCTTTGTTTAGGGGCTACAGTGCTCCTGTCCGCCTGGAAACAGATCTGAACGACGATGATCTATTTTTCCTTCTTGCCTATGATTCGGATGAGTTCAACCGTTGGGAGGCTGGACAAGTGTTGGCACGGAAACTGATGCTCCAACTGGTGGGTGATCACCAACAAAATAAGACATTGGTTCTTAACTCGAAGTTTGTTGAGGGTCTGAGATCTATACTTTCTGACTCGAGCTTGGAAAAAGAATTCATTGCCAAAGCGATAACTCTTCCTGGTGAAGGGGAAATAATGGACATGATGGAGGTTGCAGATCCTGATGCTGTTCATGCTGTTCGAACTTTCATTAGGAAGCAACTGGCCAATGCATTGAAAGCAGAGCTTCTCACTGCAGTAGAAAACAATAGGAGTTCAGAAGCATATGTGTTTAACCATCCGGAAATGGCCAGGCGTGCTTTGAAGAATACTGCTCTCGCATATCTTGCATTAGTTGAGGATGCAGAGATTGCCAATCTTGTGCTTAATGAGTATAAGAATGCCTCGAATATGACTGACCAATTCGCAGCTTTGGTGGCTATTGCTCAGAAGCCAGGTGAAACTCGTGACGAGATTCTTGCCGACTTCTATGCCAAGTGGCAGCATGACTATTTGGTTGTCAATAAATGGCTTGCTCTTCAAGCCATGTCAGACATTCCTGGTAATATTGAGAATGTTCAGAACCTCCTAAATCACAAGGCATTCGACCTGCGGAATCCAAACAAGGTATATTCTTTAATCGGAGGTTTTTGTGGATCGATCGTCAACTTTCATGCCAAGGACGGATCAGGCTACAAATTCTTGGGAGAGATTGTCCTGCAACTAGACAAAATTAATCCCCAGGTGAGTTCAGGATCAGCACTCCCTTCAACCATAGAATCGGTTGCCTCTCGAATGGTCTCTGCCTTCTCGAGATGGAGGCGTTACGACGAACACCGACAAAATCTTGCCAAGCTGGCTGGCATTTGGTTTGTGTTAAAAATATGCGATGTTGACGATGATGATGATATTGATATCTTACAGGCACAACTGGAGAAGATATTGTCTGCCAATGGACTGTCTGAAAATGTGTTTGAAATTGCATCAAAAAGCTTAGCAGCTTGA 2817 42.53 MGTPKEIFLKDYKMPDYYFDTVDLKFLLGEEKTIVNSRITVFPRVEGTRSGNLCNMLLSVEEDYVLDSRHLTILSPPTGSFTLEIVNEICPQNNTSLEGLYKSTGNFCTQCEAEGFRKITFYQDRPDIMAKYTCRIEADKSLYPVLLSNGNLIDQGDLEGGKHYALWEDPFKKPCYLFALVAGKLVSRDDVFITRRKISLKIWTPAEDLPKTEHAMYSLKAAMKWDEDVFGLEYDLDLFNIVAVPDFNMGAMENKSLNIFNSKLVLASPETASDADYAAILGVIGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSSDMGSRAVKRIADVSRLRNYQFPQDAGPMAHPVRPHSYIKESVILYGFARNSSYLFVLSFPFLVSFSSIFTDVYEKVCHLSIMLPLFFWVKKGAEVVRMYKTLLGSQGFRKGMDLYFKRHDGQAVLSSWDPSSQSNIILQFRWSYIYSEVQSFTSYAKWLKIHRQDVPPTPGQSVKEPMFIPVALGLLDSSGNNLRLSSIYHDGVLQSVSENDQPVYSTVLRLTKKEEEFVFSDIPERPVPSLFRGYSAPVRLETDLNDDDLFFLLAYDSDEFNRWEAGQVLARKLMLQLVGDHQQNKTLVLNSKFVEGLRSILSDSSLEKEFIAKAITLPGEGEIMDMMEVADPDAVHAVRTFIRKQLANALKAELLTAVENNRSSEAYVFNHPEMARRALKNTALAYLALVEDAEIANLVLNEYKNASNMTDQFAALVAIAQKPGETRDEILADFYAKWQHDYLVVNKWLALQAMSDIPGNIENVQNLLNHKAFDLRNPNKVYSLIGGFCGSIVNFHAKDGSGYKFLGEIVLQLDKINPQVSSGSALPSTIESVASRMVSAFSRWRRYDEHRQNLAKLAGIWFVLKICDVDDDDDIDILQAQLEKILSANGLSENVFEIASKSLAA 938
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2562878 2570606 + Lsi09G002430.1 Lsi09g00243 669856

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00243 938 Pfam Peptidase family M1 domain 217 354 IPR014782 GO:0008237|GO:0008270
Lsi09g00243 938 PANTHER - 910 938 IPR012779 GO:0008270
Lsi09g00243 938 PRINTS Membrane alanyl dipeptidase (M1) family signature 283 298 IPR001930 GO:0006508
Lsi09g00243 938 PRINTS Membrane alanyl dipeptidase (M1) family signature 167 182 IPR001930 GO:0006508
Lsi09g00243 938 PRINTS Membrane alanyl dipeptidase (M1) family signature 302 314 IPR001930 GO:0006508
Lsi09g00243 938 PRINTS Membrane alanyl dipeptidase (M1) family signature 247 257 IPR001930 GO:0006508
Lsi09g00243 938 Pfam Domain of unknown function (DUF3458_C) ARM repeats 579 889 IPR024601 -
Lsi09g00243 938 SUPERFAMILY Leukotriene A4 hydrolase N-terminal domain 6 183 IPR042097 -
Lsi09g00243 938 Gene3D - 469 575 IPR038438 -
Lsi09g00243 938 Gene3D - 189 268 - -
Lsi09g00243 938 Gene3D - 578 937 IPR037144 -
Lsi09g00243 938 Gene3D tricorn interacting facor f3 domain 14 185 IPR042097 -
Lsi09g00243 938 CDD M1_APN 11 445 - -
Lsi09g00243 938 PANTHER - 1 889 IPR012779 GO:0008270
Lsi09g00243 938 Gene3D Neutral Protease Domain 2 269 449 IPR027268 -
Lsi09g00243 938 PANTHER BNAC06G01820D PROTEIN 1 889 - -
Lsi09g00243 938 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 196 446 - -
Lsi09g00243 938 Pfam Peptidase M1 N-terminal domain 79 177 IPR045357 -
Lsi09g00243 938 Pfam Domain of unknown function (DUF3458) Ig-like fold 484 576 IPR035414 -
Lsi09g00243 938 PANTHER BNAC06G01820D PROTEIN 910 938 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00243 K01256 pepN; aminopeptidase N [EC:3.4.11.2] - csv:101216008 1370.91
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00585 Lsi-Chr7:6225265 Lsi09g00243 Lsi-Chr9:2562878 3.54E-18 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g302 . . . . . . Bma07g01666 . . . Cma02g01441 . Car02g01208 . . . Cpe05g00346 . . . . . . . . . . . . . . Cone8ag0292 Cone12ag0298 . . . Csa05g00269 Chy09g01240 . . . . Bda09g00031 . . . . . Cmo02g01477 Cmo15g01300 . . . . . Cpe13g00149 Bhi12g00279 . . Lac11g2075 Hepe06g1533 . Lcy12g1636 Cla01g00252 Cam01g0258 Cec01g0250 Cco01g0263 Clacu01g0256 Cmu01g0245 Cre09g2264 Lsi09g00243 . . Cme09g01774
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004484 2 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 2 1 2 1 1 1 1 2 1 2 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00243 Lsi_Chr09 FPKM 5.341823 5.210493 7.981537 9.212062 7.63892 6.424616 9.138432 8.450203 7.517396 8.270994