Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00245 ATGGATGCCACGGTGGTGGCCGCGGTAGTCGCGGTGGTGGTGACGTACATGATTTGGTTCTTGAATATCAAACGGTCGTTGAGTGGACCACGTGTCTGGCCACTATTGGGTAGTCTTCCAGGTCTGATTAAGAATAGTCACCGTATGCATGATTGGATCGTAGAGAATTTGCGGTCGACGGGTGGAACGTACCAAACTTGTACGTGTGTCATTCCGTTTTTGACAAAAAAGCAAGGATTTGTGACGGTCACGTGCGACCCGAAGAATTTGGAGCATATTTTGAAGACACGATTCGAGAATTATCCGAAAGGGCCTAATTGGCAGGATGTGTTTCATGATTTGCTTGGTGACGGAATCTTTAATTCTGACGGGAACACGTGGTTGTTCCAGCGTAAGACTGCTGCGCTGGAATTTACCACTAGAACTCTACGCCAAGCCATGGCTCGTTGGGTTAATCGAGCTATTAAGTCACGTTTTTGCCCGATTCTTGAGTTGGCTCAATGTCAAGCCAAGCCTGTTGATCTCCAGGACCTTCTGCTTCGACTCACATTCGATAATATTTGTGGATTAACTTTTGGTAAAGATCCGCAAACTCTCGCCCCTGAATTACCTGAGAACAACTTCGCTATGGCTTTTGATCGAGCCACAGAAGCCACATTATGTCGCTTTATTTTGCCTAGCTTTATATGGAAGCTAAAGAAATGGCTCCGGCTCGGGATGGAGGTGACCTTAACCCAAAGTCTCGAGCACACAAATCAATACCTGACCAATATCATCGAGACACGTAAGCTCGAGCTGTCCAATCAACATCTGGTCAACAATAGTCAAACTCCTCACGACGATTTGCTATCAAGGTTCATGAAAAAGAAGGGATCCTACTCAGACACATTCCTCCAACACGTGGCACTCAACTTCATCCTAGCTGGACGAGACACATCATCTGTGGCGCTGAGCTGGTTCTTCTGGCTAGTCATAAAAAACTCAAGAGTAGAAGAAAAAATCCTTAAAGAAATTTGCACTGTCCTAATGGATACACGTGGCAAAGAAATGTCCACGTGGATTGAAGAGCCATTGAGATTTGAAGAAGTGGATCGATTAATTTATCTCAAAGCCGCCATATCGGAAACTCTCCGACTCTACCCATCAGTGCCGCAAGATTCAAAACACGTAATAAACGACGACATTTTACCCACAGGAACTTTCGTCCCCGCTGGCTCCTCCGTTACATATTCAATATATTCTATTGGTCGAATGAAATTCATTTGGGGAGAAGATTGTTTAGAATTCAAACCAGAGAGATGGTTAGTTACCGATGATGAAAACAAAATTGAGCTTCAAAATGCTTATAAATTCGTTGCCTTTAATGCCGGCCCAAGAATTTGTTTAGGAAAAGATTTGGCTTACTTACAAATGAAGTCAATTGCAGCGGCGGTCTTGCTCCGCCACCGCCTGACTCTGGTCGCCGGCCACCGTGTTGAGCAGAAGATGTCGTTGACGTTGTTCATGAAGTATGGCCTCAAAGTTCACTTGCATCCCAGAGATTTGGTCCCTGTGGTGGAGAAAATTAGCAAGATCGCGGCGGAGACGGCGGCTGTGGCGGCAGATTGA 1608 45.58 MDATVVAAVVAVVVTYMIWFLNIKRSLSGPRVWPLLGSLPGLIKNSHRMHDWIVENLRSTGGTYQTCTCVIPFLTKKQGFVTVTCDPKNLEHILKTRFENYPKGPNWQDVFHDLLGDGIFNSDGNTWLFQRKTAALEFTTRTLRQAMARWVNRAIKSRFCPILELAQCQAKPVDLQDLLLRLTFDNICGLTFGKDPQTLAPELPENNFAMAFDRATEATLCRFILPSFIWKLKKWLRLGMEVTLTQSLEHTNQYLTNIIETRKLELSNQHLVNNSQTPHDDLLSRFMKKKGSYSDTFLQHVALNFILAGRDTSSVALSWFFWLVIKNSRVEEKILKEICTVLMDTRGKEMSTWIEEPLRFEEVDRLIYLKAAISETLRLYPSVPQDSKHVINDDILPTGTFVPAGSSVTYSIYSIGRMKFIWGEDCLEFKPERWLVTDDENKIELQNAYKFVAFNAGPRICLGKDLAYLQMKSIAAAVLLRHRLTLVAGHRVEQKMSLTLFMKYGLKVHLHPRDLVPVVEKISKIAAETAAVAAD 535
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2581643 2583250 + Lsi09G002450.1 Lsi09g00245 669858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00245 535 Pfam Cytochrome P450 28 499 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g00245 535 PANTHER CYTOCHROME P450 86A7 5 515 - -
Lsi09g00245 535 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 454 463 IPR017972 GO:0005506|GO:0016705
Lsi09g00245 535 SUPERFAMILY Cytochrome P450 20 513 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g00245 535 PRINTS P450 superfamily signature 308 325 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g00245 535 PRINTS P450 superfamily signature 371 382 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g00245 535 PRINTS P450 superfamily signature 461 472 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g00245 535 PRINTS P450 superfamily signature 452 461 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g00245 535 PRINTS E-class P450 group I signature 370 388 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g00245 535 PRINTS E-class P450 group I signature 297 314 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g00245 535 PRINTS E-class P450 group I signature 451 461 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g00245 535 PRINTS E-class P450 group I signature 461 484 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g00245 535 PRINTS E-class P450 group I signature 317 343 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g00245 535 PANTHER CYTOCHROME P450 5 515 - -
Lsi09g00245 535 Gene3D Cytochrome P450 22 515 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02534 Lsi-Chr2:31830474 Lsi09g00245 Lsi-Chr9:2581643 8.53E-155 dispersed
Lsi03g01176 Lsi-Chr3:22115304 Lsi09g00245 Lsi-Chr9:2581643 4.51E-154 dispersed
Lsi09g00245 Lsi-Chr9:2581643 Lsi01g01073 Lsi-Chr1:8917514 7.32E-102 dispersed
Lsi02g01298 Lsi-Chr2:17334962 Lsi09g00245 Lsi-Chr9:2581643 0 transposed
Lsi11g00985 Lsi-Chr11:16390830 Lsi09g00245 Lsi-Chr9:2581643 3.28E-105 transposed
Lsi09g00245 Lsi-Chr9:2581643 Lsi09g01572 Lsi-Chr9:23852959 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00245 K15398 - csv:101216733 956.051