Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00247 ATGGAGGGGAAAGAAGAGGACGTGAAGCTAGGAGCAAACAAGTTCTCAGAAAGACAGCCAATCGGCACATCGGCGCAGACAGACAAGGACTACAAAGAGCCACCGCCGGCGCCGCTGTACGAGCCCGGCGAGCTGACGTCATGGTCGTTTTACAGAGCCGGAATCGCGGAGTTTGTGGCTACTTTCTTGTTCCTCTACATCACCATCTTGACGGTGATGGGAGTCAGCCGAGCTCCGTCGAAATGCTCCACCGTCGGCATTCAGGGCATCGCTTGGGCTTTCGGCGGCATGATCTTCGCCCTCGTCTACTGTACCGCCGGCATCTCCGGTGGGCACATTAATCCGGCGGTGACGTTTGGGCTTTTCCTGGCGAGAAAACTGTCCCTCACCAGAGCCATATTCTACATCATAATGCAATGCCTTGGCGCCATCTGCGGCGCCGGTGTCGTGAAGGGCTTCGAGGGGTCTACCTACGTGCAGAAGCTCGGTGGTGCGAACTTCGTCGCCTCTGGCTACACCAAAGGCAGCGGCCTCGGTGCTGAGATCATCGGTACCTTCGTTCTCGTCTACACCGTCTTCTCCGCTACCGATGCCAAGAGAAATGCCAGAGATTCTCATGTCCCTATTTTGGCTCCTCTTCCCATTGGGTTTGCAGTGTTTTTGGTTCATTTAGCCACCATTCCCATCACCGGCACCGGCATTAATCCGGCCAGGAGTCTCGGAGCTGCAATCATCTACAACAGGCAACACGCTTGGGATGACCATTGGATCTTCTGGGTGGGACCTTTCATTGGAGCTGCTTTGGCAGCTATTTACCACCAAATCATCATCAGAGCCATTCCATTCAAGGCCAGAGCTTGA 861 55.05 MEGKEEDVKLGANKFSERQPIGTSAQTDKDYKEPPPAPLYEPGELTSWSFYRAGIAEFVATFLFLYITILTVMGVSRAPSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYIIMQCLGAICGAGVVKGFEGSTYVQKLGGANFVASGYTKGSGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNRQHAWDDHWIFWVGPFIGAALAAIYHQIIIRAIPFKARA 286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2583854 2587471 - Lsi09G002470.1 Lsi09g00247 669860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00247 286 TIGRFAM MIP: MIP family channel proteins 56 272 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi09g00247 286 Pfam Major intrinsic protein 44 273 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi09g00247 286 MobiDBLite consensus disorder prediction 1 36 - -
Lsi09g00247 286 SUPERFAMILY Aquaporin-like 44 278 IPR023271 -
Lsi09g00247 286 PANTHER PLASMA MEMBRANE INTRINSIC PROTEIN 1 285 - -
Lsi09g00247 286 ProSitePatterns MIP family signature. 112 120 IPR022357 -
Lsi09g00247 286 CDD MIP 52 276 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi09g00247 286 Gene3D Glycerol uptake facilitator protein. 37 284 IPR023271 -
Lsi09g00247 286 PRINTS Major intrinsic protein family signature 180 198 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi09g00247 286 PRINTS Major intrinsic protein family signature 131 150 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi09g00247 286 PRINTS Major intrinsic protein family signature 256 276 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi09g00247 286 PRINTS Major intrinsic protein family signature 52 71 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi09g00247 286 PRINTS Major intrinsic protein family signature 94 118 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi09g00247 286 PRINTS Major intrinsic protein family signature 216 238 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi09g00247 286 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 285 IPR034294 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g02187 Lsi-Chr3:32952177 Lsi09g00247 Lsi-Chr9:2583854 2.54E-128 dispersed
Lsi04g00960 Lsi-Chr4:10051779 Lsi09g00247 Lsi-Chr9:2583854 0 dispersed
Lsi04g00961 Lsi-Chr4:10060298 Lsi09g00247 Lsi-Chr9:2583854 1.25E-180 dispersed
Lsi09g00247 Lsi-Chr9:2583854 Lsi10g01268 Lsi-Chr10:16972498 9.42E-143 dispersed
Lsi09g00247 Lsi-Chr9:2583854 Lsi04g00959 Lsi-Chr4:10044700 4.57E-180 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00247 K09872 - csv:101217440 561.222