Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi09g00247 | ATGGAGGGGAAAGAAGAGGACGTGAAGCTAGGAGCAAACAAGTTCTCAGAAAGACAGCCAATCGGCACATCGGCGCAGACAGACAAGGACTACAAAGAGCCACCGCCGGCGCCGCTGTACGAGCCCGGCGAGCTGACGTCATGGTCGTTTTACAGAGCCGGAATCGCGGAGTTTGTGGCTACTTTCTTGTTCCTCTACATCACCATCTTGACGGTGATGGGAGTCAGCCGAGCTCCGTCGAAATGCTCCACCGTCGGCATTCAGGGCATCGCTTGGGCTTTCGGCGGCATGATCTTCGCCCTCGTCTACTGTACCGCCGGCATCTCCGGTGGGCACATTAATCCGGCGGTGACGTTTGGGCTTTTCCTGGCGAGAAAACTGTCCCTCACCAGAGCCATATTCTACATCATAATGCAATGCCTTGGCGCCATCTGCGGCGCCGGTGTCGTGAAGGGCTTCGAGGGGTCTACCTACGTGCAGAAGCTCGGTGGTGCGAACTTCGTCGCCTCTGGCTACACCAAAGGCAGCGGCCTCGGTGCTGAGATCATCGGTACCTTCGTTCTCGTCTACACCGTCTTCTCCGCTACCGATGCCAAGAGAAATGCCAGAGATTCTCATGTCCCTATTTTGGCTCCTCTTCCCATTGGGTTTGCAGTGTTTTTGGTTCATTTAGCCACCATTCCCATCACCGGCACCGGCATTAATCCGGCCAGGAGTCTCGGAGCTGCAATCATCTACAACAGGCAACACGCTTGGGATGACCATTGGATCTTCTGGGTGGGACCTTTCATTGGAGCTGCTTTGGCAGCTATTTACCACCAAATCATCATCAGAGCCATTCCATTCAAGGCCAGAGCTTGA | 861 | 55.05 | MEGKEEDVKLGANKFSERQPIGTSAQTDKDYKEPPPAPLYEPGELTSWSFYRAGIAEFVATFLFLYITILTVMGVSRAPSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYIIMQCLGAICGAGVVKGFEGSTYVQKLGGANFVASGYTKGSGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNRQHAWDDHWIFWVGPFIGAALAAIYHQIIIRAIPFKARA | 286 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 2583854 | 2587471 | - | Lsi09G002470.1 | Lsi09g00247 | 669860 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi09g00247 | 286 | TIGRFAM | MIP: MIP family channel proteins | 56 | 272 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Lsi09g00247 | 286 | Pfam | Major intrinsic protein | 44 | 273 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Lsi09g00247 | 286 | MobiDBLite | consensus disorder prediction | 1 | 36 | - | - | |
Lsi09g00247 | 286 | SUPERFAMILY | Aquaporin-like | 44 | 278 | IPR023271 | - | |
Lsi09g00247 | 286 | PANTHER | PLASMA MEMBRANE INTRINSIC PROTEIN | 1 | 285 | - | - | |
Lsi09g00247 | 286 | ProSitePatterns | MIP family signature. | 112 | 120 | IPR022357 | - | |
Lsi09g00247 | 286 | CDD | MIP | 52 | 276 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Lsi09g00247 | 286 | Gene3D | Glycerol uptake facilitator protein. | 37 | 284 | IPR023271 | - | |
Lsi09g00247 | 286 | PRINTS | Major intrinsic protein family signature | 180 | 198 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Lsi09g00247 | 286 | PRINTS | Major intrinsic protein family signature | 131 | 150 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Lsi09g00247 | 286 | PRINTS | Major intrinsic protein family signature | 256 | 276 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Lsi09g00247 | 286 | PRINTS | Major intrinsic protein family signature | 52 | 71 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Lsi09g00247 | 286 | PRINTS | Major intrinsic protein family signature | 94 | 118 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Lsi09g00247 | 286 | PRINTS | Major intrinsic protein family signature | 216 | 238 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Lsi09g00247 | 286 | PANTHER | AQUAPORIN OR AQUAGLYCEROPORIN RELATED | 1 | 285 | IPR034294 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi03g02187 | Lsi-Chr3:32952177 | Lsi09g00247 | Lsi-Chr9:2583854 | 2.54E-128 | dispersed | |
Lsi04g00960 | Lsi-Chr4:10051779 | Lsi09g00247 | Lsi-Chr9:2583854 | 0 | dispersed | |
Lsi04g00961 | Lsi-Chr4:10060298 | Lsi09g00247 | Lsi-Chr9:2583854 | 1.25E-180 | dispersed | |
Lsi09g00247 | Lsi-Chr9:2583854 | Lsi10g01268 | Lsi-Chr10:16972498 | 9.42E-143 | dispersed | |
Lsi09g00247 | Lsi-Chr9:2583854 | Lsi04g00959 | Lsi-Chr4:10044700 | 4.57E-180 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi09g00247 | K09872 | - | csv:101217440 | 561.222 |