Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00248 ATGGATTTGCAGAGGCTTTTTCTTGGTGGGTTTGCCATATCTACTCTGGTTTTGCTGCTGATTTTTCCTTCTCACGTGACTGCTGGGGATATAGTTCACCATGACGATTTGACTCCCAAAAAGCCTGGCTGTGAGAACGACTTCATTCTGGGTTTTGCATCATTCATTCTATTTGTGTACTTTATAATGGGAGATACTCTTCCTGGAAAAGATGCAAAGGATGTTTTAAAGAAGATTGTCATTGTCTGTTATTTAGGAACATCAATGTATACTTATTTTTCTTCAAACTTCTATTTCTATGTGCACATATTAATTCTTGCTGCTGTTCTTGTTGCCCGTTCAGAACCCAATGTTAAAGTTCAAACTTGGATTGATGGCAAAGAAGCTAGTGAATTTGTCGGCGTTGGTGCTAGATTTGGCGCTACCATCGTGTCGAAGGAGAAAAATGCAAACCAAACACGCCTAGTTCTTGCAAATCCTCGTGATTGTTGCAGTGTGCCAAAGAACAAGCTTTCTGGGGATATAATCATGGTTGATCGAGGTCACTGCAAATTTACTACAAAAGCAAATATTGCAGAAGCTGCAGGTGCTTCAGCTATACTCATAGTAAATAACCAAAAAGAGCTTTACAAGATGGTTTGTGATCCTGATGAGACTGATCTTGATATACATATACCTGCTGTCATGCTCCCACAAGATGCTGGAACAAGTTTGGAGAAGATGCTAATCATGTCTGTTCAGCTCTACTCTCCACTACGACCACCAGTTGACATAGCTGAAGTATTCTTATGGTTGATGGCTGTCGGTACGATCTTGTGCGCGTCTTTTTGGTCTGCCTGGAGTGCTAGGGAAGCAGCTATTGAGCAGGACAAGCTTCTAAAGGATGGTGCAGATGATATTCAAAATGCTGAAGACATGGGCAGGCCTGGTGTTGTATATATTAACATGGCATCGGCAGTCTTGTTTGTCGTCGTTGCTTCGTGCTTTTTGATTTTGCTTTACAAACTCATGTCGTACTGGTTCATCGAGCTTTTGGTAGTCCTTTTCTGCATAGGAGGTGCAGAGGTATGGCACAAAGGCCTTAACTATCAGGCATTCAATAACATAGGCTTACAAACTTGCTTGGTTGCGTTATTGTCAAGATGCTTTAAGCAAGTTGGAGAATCATACATCAAAGTGCCATTCTTTGGAGCTGTTTCATACCTCACTGTTGCTGTTTCTCCATTCTGCATAGCATTTGCTGTTGTTTGGGCTGTTTATAGGAATGTGTCATTTGCCTGGATCGGTCAAGACATACTTGGAATTGCACTGATAATTACAGTTCTTCAAATAGTTCGTATACCAAATCTCAAGGTTGGAACAGTGCTCCTCAGTTGTGCCTTCCTTTATGATATCTTCTGGGTATTTGTTTCTAAGAAGTTGTTCAATGAAAGTGTGATGATTGTGGTGGCTCGTGGCGATAAAAGCGGAGAGGACGGCATCCCAATGCTGCTAAAGATCCCTCGCATGTTTGATCCGTGGGGTGGTTATAGCATTATCGGATTTGGTGACATCCTTTTGCCTGGACTCGTAGTAGCATTTTCTCTCAGGTACGATTGGTTGGCGAATAAGAGCCTCTGTGTCGGTTACTTCTTACCAGCAATGCTTGCTTATGGATCAGGTCTTCTAATTACCTATGTGGCTTTGAACCTGATGGATGGCCATGGCCAGCCCGCGCTGCTTTACATCGTCCCGTTCACTCTCGGAACCCTTTTGACACTGGGAAAGAAGAGAAGAGATTTGGGGATTCTGTGGACAAAAGGAGAACCAGAAAGGGTCTGCCCTCATGCCCATCTTCTCATCAATGATGATTTAAATGAAGAAAAATGA 1869 42.54 MDLQRLFLGGFAISTLVLLLIFPSHVTAGDIVHHDDLTPKKPGCENDFILGFASFILFVYFIMGDTLPGKDAKDVLKKIVIVCYLGTSMYTYFSSNFYFYVHILILAAVLVARSEPNVKVQTWIDGKEASEFVGVGARFGATIVSKEKNANQTRLVLANPRDCCSVPKNKLSGDIIMVDRGHCKFTTKANIAEAAGASAILIVNNQKELYKMVCDPDETDLDIHIPAVMLPQDAGTSLEKMLIMSVQLYSPLRPPVDIAEVFLWLMAVGTILCASFWSAWSAREAAIEQDKLLKDGADDIQNAEDMGRPGVVYINMASAVLFVVVASCFLILLYKLMSYWFIELLVVLFCIGGAEVWHKGLNYQAFNNIGLQTCLVALLSRCFKQVGESYIKVPFFGAVSYLTVAVSPFCIAFAVVWAVYRNVSFAWIGQDILGIALIITVLQIVRIPNLKVGTVLLSCAFLYDIFWVFVSKKLFNESVMIVVARGDKSGEDGIPMLLKIPRMFDPWGGYSIIGFGDILLPGLVVAFSLRYDWLANKSLCVGYFLPAMLAYGSGLLITYVALNLMDGHGQPALLYIVPFTLGTLLTLGKKRRDLGILWTKGEPERVCPHAHLLINDDLNEEK 622
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2593995 2600596 - Lsi09G002480.1 Lsi09g00248 669861

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00248 622 Pfam PA domain 155 238 IPR003137 -
Lsi09g00248 622 PANTHER SIGNAL PEPTIDE PEPTIDASE-LIKE 2 118 617 - -
Lsi09g00248 622 Pfam Signal peptide peptidase 312 602 IPR007369 GO:0004190|GO:0016021
Lsi09g00248 622 SMART psh_8 310 591 IPR006639 GO:0004190|GO:0016021
Lsi09g00248 622 SUPERFAMILY PA domain 160 210 IPR046450 -
Lsi09g00248 622 Gene3D - 116 250 - -
Lsi09g00248 622 PANTHER SIGNAL PEPTIDE PEPTIDASE-LIKE 2 12 50 - -
Lsi09g00248 622 PANTHER SIGNAL PEPTIDE PEPTIDASE 12 50 IPR007369 GO:0004190|GO:0016021
Lsi09g00248 622 PANTHER SIGNAL PEPTIDE PEPTIDASE 118 617 IPR007369 GO:0004190|GO:0016021
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00248 K09597 SPPL2B; signal peptide peptidase-like 2B [EC:3.4.23.-] - csv:101216966 925.62
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00316 Lsi-Chr8:8295112 Lsi09g00248 Lsi-Chr9:2593995 3.18E-16 dispersed
Lsi09g00248 Lsi-Chr9:2593995 Lsi05g01216 Lsi-Chr5:20026351 7.51E-10 dispersed
Lsi04g02224 Lsi-Chr4:29278038 Lsi09g00248 Lsi-Chr9:2593995 7.15E-21 transposed
Lsi08g00313 Lsi-Chr8:8216286 Lsi09g00248 Lsi-Chr9:2593995 1.78E-62 transposed
Lsi08g00314 Lsi-Chr8:8269898 Lsi09g00248 Lsi-Chr9:2593995 8.32E-36 transposed
Lsi08g00315 Lsi-Chr8:8283362 Lsi09g00248 Lsi-Chr9:2593995 5.40E-17 transposed
Lsi09g00248 Lsi-Chr9:2593995 Lsi09g01570 Lsi-Chr9:23816173 9.38E-106 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g312 . . . . . . . . . . Cma02g01443 Cma15g01234 Car02g01211 Car15g01111 . . Cpe05g00343 . . . . . . . . . . . . . . Cone8ag0298 Cone12ag0304 . . . Csa05g00272 Chy09g01236 . . . . . . . . . . Cmo02g01479 Cmo15g01297 . . . . . Cpe13g00152 Bhi12g00274 . . Lac11g2079 Hepe06g1537 . Lcy12g1640 . . . . . . . Lsi09g00248 . . Cme09g01770
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002068 3 3 2 4 2 1 4 1 1 2 1 1 2 2 2 3 1 4 4 1 2 2 2 1 3 2 2 2 3 2 65
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00248 Lsi_Chr09 FPKM 2.887985 2.721267 1.771114 1.896803 3.754941 3.746255 3.261025 2.188055 2.041024 2.144351