Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00249 ATGGCTTCAACTTTCACTTTCCGTCCATTTCCTCTCATTCTCTCTCCTCGCCCCAATTTTCCCTCTCTAAGATCTCAATTTCACCGCCAATATCTTCCCACCATTCGAATTCTTCGACCTTCAGTTCCTTCCGCCATCGGTCCGGACGGCAAATTCTATCCGGACCCGGCCGACGACGACCCGCCGGAAGCTCTGGAAGATTCTGGCCATGGAGTTTCAAAGTTTCAGCAGATATACCGCCAGGCGGCTCGTGCGAGGAAGCTTCAGGAGGAGGATTTCAAGAAGCATCAGTCTACTTATCTTTCGGCCATTGCTGACGTTGAGGATGCTCCTGAGAATGCGGAGTATTTGAATTCGGAGAGCTCGGGTGATGATTTGTTCGGTGAAATTGACAAAGCTATTGCTCTGAAGCGGAAGGAGTTCGTGAAGCAGGGACTTCTCAAGCCTAACCCGAAGAAAGAAAAGGCAGCTGAGAAAGATGATCTTGAGGGCATTGATGAGTTGGAGACTGAGGAGGTCGCGGACTTGGAGGAGATTAACGAGCTTCGAGGGCTTACAGTGATTTCGGAGGACGAGGACGAGGATGGAGATGGGCCTAGGAATTTGGATGACAATGTAAGTGAATTAGGTGGTCAGGATGAACTATCTTCTTTTAATTCTTTTGATATGGATTTTGATAGCTATGGAAAAGTTAAGGCTAGGATTGTGGAACCCAAGTTCAAAATGACTTTAGCCGAGCTCTTGGATGAAAGTAAGGTCGTTCCAGTTTCTGTTTTTGGCAATTTAGAGATAGAAATTACTGGCATTCAACATGATTCGAGGATGGTTAGCTCGGGTGACTTGTTTGTGTGCTGTGTTGGGAGGGAAACTGATGGACACTTGTATTTAACTGAGGCGGATAAGAGGGGTGCAGTGGCTGTGGTGGCTAGCAAGGAGATAGACATAGAAGAAACTTTGGGCTGTAAAGCTTTGGTAATGGTGGAGGATACTAACTCTGTTCTTCCTGCATTGGCTGCTTCTTTTTACAGGAACCCCTCTAAGAATATGGCCGTGATAGGAATAACTGGGACAGATGGGAAAACGAGCACTTCCTACTTGATAAAGGGGATGTATGAGGCAATGGGGTTGAGAACTGGGTTGTTAGGTACAGTGGCCTATTATTTACATGGGGACAATAAGTTGGAGTCGCCAAGTACAACCCCGGATGCTATTTTGGTCCAAAACTTAATGGCGAAGATGCTTCATAATGGAACTGAAGCGGTTGTCATGGAGGTTTCGTCTGATGAGCTTGCTCGTGGCAGGTGTGATGAAGTTGATTTTGATATAGCGGTTTTCACAAATTTGACTGGGGACCATTTGGATTTTCAAGGGTCTGAAGAGGAGTATAGGGATGCTAAAGCCAAGCTATTTAAAAGGATGGTGGATCCAGACCGACACCGAAAAGTTATTAACATCGATGATCCCAATGCACCATTCTTCATAGGTCAAGGAAACCCAGATGTGCCTGTTGTCACCTTTGCAATGGAAAACAAAAATGCCGATGTCCATCCGCTGAAATATGAATTGTCACTATTTGAGACACAGGTTCTGGTTCACACTCCCCAGGGCATACTGGAGATATCGTCGGGGTTGCTTGGAAAGCACAACATATACAATATTCTTGCAGCAGTGGCAGTAGGAATTGCAGTTGGAGCACCATTAGAGGATATTGTTAGAGGTGTTGAAGAGGTTGATGCTGTTCCTGGGAGATTCGAGCTGATTGATGAGGAGCAGGCATTTGGTGTAATTGTTGATCATGCTCATACTCCAGATGGTCTATCCCGGCTGCTCGATTCTCCTCGGGATTTATTTGGGGACTGTGTTTCTTATTCTGTTTGTGAAGTTTTTGGATGCTGTGGCGAGCATGACAGGGGGAAAAGACCCATGATGACAAAGATTGCAACTGATAAAAGCGATGTTACAATTCTGACATCTGATAATCCAAGGAATGAAGATCCATTGGACATCTTGGATGATATGTTGGCTGGTATAGGCTGGACCATGCAGGATTACTTGAAACATGGAGAAAATGATTACTACCCGCCTCTCTCAAATGGTCATAGGATTTTCCTGCATGATATCAGACGTGTGGCTGTACGTGCTGCTGTTGCAATGGGTGAGGAAGGCGACGTGGTTGTGGTTGCTGGCAAGGGCCATGAAACATATCAAATTGAAGGTTACCAGAGAGTCATTGATACAGGATTGAAGAAAGGAATAGATATTCTGGAAGCTATCCTCGGATAA 2283 45.51 MASTFTFRPFPLILSPRPNFPSLRSQFHRQYLPTIRILRPSVPSAIGPDGKFYPDPADDDPPEALEDSGHGVSKFQQIYRQAARARKLQEEDFKKHQSTYLSAIADVEDAPENAEYLNSESSGDDLFGEIDKAIALKRKEFVKQGLLKPNPKKEKAAEKDDLEGIDELETEEVADLEEINELRGLTVISEDEDEDGDGPRNLDDNVSELGGQDELSSFNSFDMDFDSYGKVKARIVEPKFKMTLAELLDESKVVPVSVFGNLEIEITGIQHDSRMVSSGDLFVCCVGRETDGHLYLTEADKRGAVAVVASKEIDIEETLGCKALVMVEDTNSVLPALAASFYRNPSKNMAVIGITGTDGKTSTSYLIKGMYEAMGLRTGLLGTVAYYLHGDNKLESPSTTPDAILVQNLMAKMLHNGTEAVVMEVSSDELARGRCDEVDFDIAVFTNLTGDHLDFQGSEEEYRDAKAKLFKRMVDPDRHRKVINIDDPNAPFFIGQGNPDVPVVTFAMENKNADVHPLKYELSLFETQVLVHTPQGILEISSGLLGKHNIYNILAAVAVGIAVGAPLEDIVRGVEEVDAVPGRFELIDEEQAFGVIVDHAHTPDGLSRLLDSPRDLFGDCVSYSVCEVFGCCGEHDRGKRPMMTKIATDKSDVTILTSDNPRNEDPLDILDDMLAGIGWTMQDYLKHGENDYYPPLSNGHRIFLHDIRRVAVRAAVAMGEEGDVVVVAGKGHETYQIEGYQRVIDTGLKKGIDILEAILG 760
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2601143 2606810 - Lsi09G002490.1 Lsi09g00249 669862

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00249 760 Gene3D - 243 343 - -
Lsi09g00249 760 Gene3D - 585 749 IPR036615 GO:0009058|GO:0016881
Lsi09g00249 760 Pfam Mur ligase middle domain 354 559 IPR013221 GO:0005524|GO:0009058|GO:0016881
Lsi09g00249 760 PANTHER MUR LIGASE FAMILY MEMBER 242 744 - -
Lsi09g00249 760 MobiDBLite consensus disorder prediction 184 209 - -
Lsi09g00249 760 MobiDBLite consensus disorder prediction 53 67 - -
Lsi09g00249 760 SUPERFAMILY MurD-like peptide ligases, peptide-binding domain 580 744 IPR036615 GO:0009058|GO:0016881
Lsi09g00249 760 Pfam Mur ligase family, catalytic domain 265 342 IPR000713 GO:0009058|GO:0016881
Lsi09g00249 760 PANTHER UDP-N-ACETYLMURAMOYL-L-ALANYL-D-GLUTAMATE--2, 6-DIAMINOPIMELATE LIGASE MURE HOMOLOG, CHLOROPLASTIC-LIKE 242 744 - -
Lsi09g00249 760 TIGRFAM murE: UDP-N-acetylmuramyl-tripeptide synthetase 264 740 IPR005761 GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301
Lsi09g00249 760 Gene3D - 345 583 IPR036565 GO:0005524|GO:0009058
Lsi09g00249 760 Hamap UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [murE]. 242 759 IPR005761 GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301
Lsi09g00249 760 SUPERFAMILY MurE/MurF N-terminal domain 242 345 IPR035911 -
Lsi09g00249 760 MobiDBLite consensus disorder prediction 48 71 - -
Lsi09g00249 760 Pfam Mur ligase family, glutamate ligase domain 580 667 IPR004101 GO:0009058|GO:0016881
Lsi09g00249 760 SUPERFAMILY MurD-like peptide ligases, catalytic domain 345 577 IPR036565 GO:0005524|GO:0009058
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00249 - - - csv:101217207 1343.18
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g313 . . . . . . . Bma14g00701 . . Cma02g01444 . Car02g01212 . . . Cpe05g00342 . . . . . . . . . . . . . . Cone8ag0299 Cone12ag0305 . . . Csa05g00273 Chy09g01235 . Blo03g00340 . Bda07g00481 . . . . . . Cmo02g01481 . . . . . . . Bhi12g00272 . . . Hepe06g1538 . Lcy12g1641 Cla01g00256 Cam01g0262 Cec01g0254 Cco01g0267 Clacu01g0260 Cmu01g0249 Cre09g2260 Lsi09g00249 . . Cme09g01769
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006982 1 3 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 2 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00249 Lsi_Chr09 FPKM 8.626698 10.174797 4.068334 4.196041 13.997758 10.929993 16.257156 2.865696 2.967197 3.79246