Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00252 ATGGGAACAAAGCATATGCAATCTAATTCTAGCATGGTTGGAAGAGTCTCAAAAACCCACAAAATGCTGTGCAAAGCTGTTGATAGACCTAGCAAAGAACTTCAACAGCCATCTCCTAAAAGTTTGGTGACTGCATCATCAAAGAATCTAGATTCAACAGCATCAACAAGAGTAGCTTGCTGCAGAAGTCGAAGATTTTGTACTTGTAAAAGTTGTATGGAGTATGGCCGACATAATGAGATTAGCCTAAGATTGGTTCAGAAGAATGAAGCGGCTGAGCCATTTTCAAGTAAAAAGTTTGTTGGTGTGGCTGATAAACAGTGTAAACAATTATTAGATGCATTGGGAATTTTCAATTCAAATAAGGAATTGTTTGTAAATCTACTACAAGACCCAAATTCTCTGTTAATTAAACGTATTGAAGACTCTACTGATTCAAGGAACAGAAAACAGCAGATGATGACTTTCTTTGATAGCAGGTTGTCTGAAAATAAGATAAGAGAAGTGGGGGAATATGAGGAGCCTGACTACAGTCAAAACTTGAAGCCCTGTGATAGATTACCCACTGAGGATAGTGATGATTCTCTATCCTTGGAAAGAATTGTGGTATTAAAGCCAAATCCAACTAGCTCACTACATGCGGCTGTGGGAACCAATCATTGCTCCTCTCTGAAATCTCATTCTAGTATCATAAAGAATGGGCAGAGTGACAAGGGAACTCTTTTTTCTTTTAGACAAATAAAGAGGAAGATGAAGCAAGCCATAAGGGTAGGGAAAAAAGAAGGTGAATGCCTATCTACTAATGGTATGGCCAAGAAAACTCCACCTGTTTGTAGGGCCCCAAAAGATGATGGTAAACAGATGGTTATGGAGGCAACTGGAAGAAGTTCCTATAGTAATATTCAAACCGATGATAAAGGAATTTCCAGTTCATTTCATGATTCCCTAGAAAAGGATCAACTAGACAAGGCATTTTACTCTAGAAATGGGGACAAGACGGCTTCAACCAGTGAAAGTACTGACAAAAAGATAGGCCAGTCAGCTGTGACAAGTAATCTCAAACGGCAGAAATCTAAGAAGCATGAAGGGGACAAAGAGGTTTCAAGAAAAATGAAAGCAAAACCATGGGGGTGGGTGATGTGCTTTTCTGATGATGACATATTGCCATCAAATAAACCTGGATGCCATACTGCAAGCCGTATGAGATATTCTCACCTTAGCAGTAGGAAGTTTATTTACGAGAAGAAGTCAAAACTGCAGAATGACGAGGAACAAAGTTGCAAAACTCCACAAATGGTTAAAATAGGAGCTTCTTTTGCAGAGGCAAGGAGAGATCATGACCAATTGGATGCTTCAACTACGGAGTTGAATGTGTCACCCGTCATTTTTCCTGATGTCAAAGTGGATCGAGATCCCATTATTGAAGGGTCTGTGAAGATCGTAAAAGACATTGCCACTATACACCAGGAAAGAAATAATTTTTGTGAAGAGTCATCTAGATTTGATAACAATTGCAACGCTAGTTATTGTCAGAGAACCAACAAGATCAAGGGCTTTGGAGAGAAAAGAAATCTGGAGCTCTCTAAACTGCTTATTTTTAAAGTTTCTATCTGTGAAGTTACTTTTCTTGAATTGAACAGCCATACAGATGCTTTGATTGCGTTTTGTTCTTCATATAATTTGCCTTTGGAGGTTCAACCATCAGCTTTTTCAGTAGATCCATTTCCATCCAGCTCATTACAATTTCAGACAGTGGAAGATCCTAATGGTTTGTGTGATAGAGAAGTGCAGCCTCTACCAGAAACTATTCATGACCAACTTTTGGTAGATGCTACCGCTAGTAATCTGGCTATCGCTCATGGAACAGCTGAGCCATCTAGTGAAGCAATTCCCAATAATTTTGAAAAGGACCAGTGTACTGGTTTGGCAAGGTTGCAAGAGGTTCTCGATCCTGCCATTGCTTCCTTTAATTGTTGTAGCTCCATCTCTCAGTGTGTACTTGAACTGCTGCAAGTCTCAAAACAGAATTGGAATGAATTGTCATTGGATTGTCATTCTTCAACTTGGCTGCAGATATCATTTGTTGACAAAGTGAAGATGTTTAGTAGCCAGTTATGTGGTGACTGTGTGCTTCTTTTCGACTATTTTAATGAAGTCCTTGAGGATGTTTTCCACTGTTATATTAGATGCTTCCCATGGTTATCATCTTATAAGGCACACGTTCAAGCACCTGATCAGGAGAGCGCTTTCTATCACGAGGTTATGCAACATGTGGATTGGTCACTTCTGCAGCAGCAGCAGCCACCACAAACACTGGACTATCTTTGTTTAAGAGACTTGAGATCTAGAACATGGATCAATTATCCAACTGAAACTGAAGAGATTGTTACCATTATAGCGGAATCGGTTTTAAGAGAATTAATCATTGAAAGTGTTGTTTACCTTGGTTTGTGA 2454 39.32 MGTKHMQSNSSMVGRVSKTHKMLCKAVDRPSKELQQPSPKSLVTASSKNLDSTASTRVACCRSRRFCTCKSCMEYGRHNEISLRLVQKNEAAEPFSSKKFVGVADKQCKQLLDALGIFNSNKELFVNLLQDPNSLLIKRIEDSTDSRNRKQQMMTFFDSRLSENKIREVGEYEEPDYSQNLKPCDRLPTEDSDDSLSLERIVVLKPNPTSSLHAAVGTNHCSSLKSHSSIIKNGQSDKGTLFSFRQIKRKMKQAIRVGKKEGECLSTNGMAKKTPPVCRAPKDDGKQMVMEATGRSSYSNIQTDDKGISSSFHDSLEKDQLDKAFYSRNGDKTASTSESTDKKIGQSAVTSNLKRQKSKKHEGDKEVSRKMKAKPWGWVMCFSDDDILPSNKPGCHTASRMRYSHLSSRKFIYEKKSKLQNDEEQSCKTPQMVKIGASFAEARRDHDQLDASTTELNVSPVIFPDVKVDRDPIIEGSVKIVKDIATIHQERNNFCEESSRFDNNCNASYCQRTNKIKGFGEKRNLELSKLLIFKVSICEVTFLELNSHTDALIAFCSSYNLPLEVQPSAFSVDPFPSSSLQFQTVEDPNGLCDREVQPLPETIHDQLLVDATASNLAIAHGTAEPSSEAIPNNFEKDQCTGLARLQEVLDPAIASFNCCSSISQCVLELLQVSKQNWNELSLDCHSSTWLQISFVDKVKMFSSQLCGDCVLLFDYFNEVLEDVFHCYIRCFPWLSSYKAHVQAPDQESAFYHEVMQHVDWSLLQQQQPPQTLDYLCLRDLRSRTWINYPTETEEIVTIIAESVLRELIIESVVYLGL 817
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2621808 2625174 + Lsi09G002520.1 Lsi09g00252 669865

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00252 817 MobiDBLite consensus disorder prediction 292 312 - -
Lsi09g00252 817 PANTHER DUF3741 FAMILY PROTEIN 3 813 - -
Lsi09g00252 817 Pfam Protein of unknown function (DUF3741) 107 134 IPR022212 -
Lsi09g00252 817 MobiDBLite consensus disorder prediction 327 369 - -
Lsi09g00252 817 MobiDBLite consensus disorder prediction 292 309 - -
Lsi09g00252 817 MobiDBLite consensus disorder prediction 355 369 - -
Lsi09g00252 817 MobiDBLite consensus disorder prediction 34 48 - -
Lsi09g00252 817 Pfam Domain of unknown function (DUF4378) 704 810 IPR025486 -
Lsi09g00252 817 MobiDBLite consensus disorder prediction 329 353 - -
Lsi09g00252 817 PANTHER ADHESIN-LIKE PROTEIN, PUTATIVE (DUF3741)-RELATED 3 813 - -
Lsi09g00252 817 MobiDBLite consensus disorder prediction 28 48 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00252 - - - bhj:120067270 1396.33
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g02040 Lsi-Chr5:27352921 Lsi09g00252 Lsi-Chr9:2621808 2.43E-15 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g314 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00276 Chy09g01233 . . . . . . . . . . . . . . . . . . Bhi12g00270 . . Lac11g2084 Hepe06g1539 . Lcy12g1643 Cla01g00257 Cam01g0264 Cec01g0255 Cco01g0270 Clacu01g0263 Cmu01g0252 Cre09g2257 Lsi09g00252 . . Cme09g01768
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007276 0 1 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 6 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00252 Lsi_Chr09 FPKM 4.838629 5.176692 6.9675 7.846498 6.280359 5.797894 6.821576 9.802176 9.563222 9.584362