Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00255 ATGGCTGAATCCAAACTGAAATTGGAGCTGGTGGAGTGGTTAAATTTTATGCTCCCCCATATAAATTTGCCACTGGATGCTTCGGATGAGGAATTGAGAGCATGCTTGATTGATGGAACTGTACTATGCAGCATGTTGGATAAACTATGCCCTGGCGCAGTTCAGGGAGGCAATTCTAAGCCCATCGTTCCTAATATCGAGAGTTTTCTGATAACTCTGGATGAATTAGCACTTCCTGGCTTTGAACCTTCTGCCTTGGAGCAGGGATCTATTGCACCGGTTTTGCACTGCCTGAGCACACTTCGAGCTTCTTTTGATTTGAGTATTGGGGATGAGTACACTCAAAATAATTCACGAAAAAAATGGAACTTATATGAAGTAGACTCATTAGATGGAATCAATAATTTATCCGGGCAAAAATTTCAAGATTTTCAGAATGGTTCAGTTGTATCAGTGCCGTCGTATGGTTTAAACAGTCATACTCAATACGAGGATCATGAAGGGCAAGAAAAAAATCATGATGTTTCTGGTTCTAACATCTTGGAGTTGATAAAATCAAAGAATCTTGAGAATGTCTCTACTCAATCACTTTTCAATATGATCAATGGAATTCTGGATGGCAGTGTTGAAACAAAAAATGGAGATGTGTCACATCAAGTAGCTTATATTCTGAGAAAAGTTGTACAAGTGCTTGAGCAGAGAATTTTAACTCATGCTGGAAACCTGAAACATCAAAGCAATCTTTTGAAAGCTCGGGAGGAGAAATTTCTCTCAAAATTAAGAGTCCTTGAAACCCTTGCAACAGGGACCACGGAAGAAAATGAGGTTGTCATGAACCAGCTTCAGCGTTTGAAGATTGAAATGTTCAAAGTAGAGGAGATGAAAAACTGTGAGGAGCATGATAAGATGGCGTTGAAGGAGCAAAAGGCACTCTGTGATGTCGAGCTTTCAAATCTTAAAGATGAGCTAGAAAAAGCTAAAAGGGAACATGAAAATCAATGCTTACAACTGGAAACAAATGCTAAGGAGGAGAAAACTAAGTTTGAGGAGAAACTAAATGAACTTGAATACTTATTAGCTGATTCCAGGAAGAACGTGAAGGAACTTGAGACATTTTCGGAATCTAAATCACTGAGATGGAAAAAGAAAGAGTTTGTCTATCAAAATTTTGTTGATGATCTGCTTCGGGCTTTTCAGGAATTAAGGATTTCAGTGGAGTCCATCAAACGTGAGGTTTTGAATACAAAAGGGAACTATGTTGAGGATTTTAATTTCCTTGGAATGAAGTTCAAAGGATTAGCAGACGTGGCTCAGAACTACAATGCAGTTCTGAACGAAAATAGAAGATTGTATAATGAAGTTCAGGATTTAAAAGGCAACATTCGAGTGTATTGTCGGATACGGCCATTCCTTCCAGGACAAAGCAAGAAACTAACTACAGTTGAATATATTGGTGAAAATGGTGAATTGGTAATTATAAATCCCGCTAAACAAGGAAAAGACAATCGTAGACTATTCAAATTCAATAAAGTTTTTGGTCCGACATGTTCACAAGAGGATGTGTTTCTAGACACACAACCATTAATTCGATCTGTCCTCGATGGATATAATGTTTGCATATTTGCTTATGGACAAACTGGTTCGGGAAAGACCTATACAATGAGTGGACCTGATGTATCATTGAGAGCAGAATGGGGTGTTAACTATCGAGCATTAAATGACCTCTTTGAAATTTCTCAAAGCAGGAAGGGCTCTATTTCCTATGAAATTGGTGTCCAAATGGTTGAGATATACAATGAGCAAGTCCGTGATCTGCTCTCAACTAGCGGTCTTCCAAAGAGACTTGGGATTTGGAACACCACTCAACCAAATGGGCTTGCAGTACCTGATGCCGGTATGCATCCTGTAAGATCTACTGGCGATGTCCTGGATTTGATGAAGATTGGATCGACAAACAGGACAGTTGGAGCCACCGCCTTGAATGAAAGAAGCAGCAGATCTCATAGTGTGCTGACAATTCATGTTCGTGGTGTGGACTTGGAGACAGATGCTATCTTACGCGGTAGTCTTCATTTAATAGATCTTGCCGGTAGTGAAAGGGTGGACCGTTCAGAGGCGACTGGAGATAGGCTGAAGGAGGCACAGCACATTAACAAATCATTGTCAGCACTCGGGGATGTAATTTTTGCTCTTGCACAGAAGAATTCACACATACCTTACAGAAATAGCAAACTAACCCAAGTCCTCCAAAGTTCTTTAGGTGGTCAAGCAAAGACGCTCATGTTTGTACAGATTAATCCCGATGTAGAGTCGTACTCTGAAACAGTAAGCACCCTGAAGTTTGCAGAAAGAGTTTCTGGTGTAGAGTTGGGTGCTGCCCGCAGCAATAAAGAGGGTAGATATGTTAGAGAACTCATGGATCAGGTGGCCGTTCTCAAGGATACCATCGCAAATAAAGATGAGGAGATTGAGCGGTTGCAGTTGCTTAAAACTAATGGCAACGGTGTAAAGCATGGCGTTGGTTCCCTAAGATATGAGTCATTTTCTCCTATAAGGCACTCTAGCATAACTCCTCGGCAGAGCCAAAAGCCATCAGGGAGAAAAGGCTTAGGGTTGACGAATAAAGCAGCATCTGACATGGACAATTTCTCAGATTATGACAGGCGTTCTGAAGCTGGATCACTTCAGTCTATGGAGGACTTCAGACATCATAAGCGTTCTGGATCTGGGTCACATCTGTTTCTAGAAGACTTTAGACACCATAAGCGTTCTGAATCTGGATCACATCTGTCTGTAGAGGACTTTAGACATCAGAAGGAATCTTCTTCACAGTCAAGGGCTTTAAGTCAGAATGTTACTGATGATGTTGACCTTTTAGGCTTTGGAAATGCTGATTCCGATGAGAGATTAAGTGACATATCAGATGGTGGGCTTTCAATGGGAACTGAAACCGATGGATCAATTTGCAGTGTTGTGGAATACACTCTATTCCCCGAAGTTTTAAAACCATCAGATATTTCGTTTGCCGATACCAAGTACCCGGAGAGCACATTGGATGTAAAAAGGCCAGCAGAGAATGCAACAACTGGGGGGAAGTCATTGGTTCCTATTCCAGAAAAAACCAATACACAATCGAAGACAGGCTCCAGGCCCCCACAAAAGCCCGTGCAAGCAAAACCGTCAAGAGTTTCATTGACGAAAAGCTCCTCAAAGGCTCCATCAGCATCAAGTGCCAAAAAAACGATTGTTGGTAGCTCCTTGTCGATGAAAAGCAGCAAAAGGTGGAAGTGA 3291 41.26 MAESKLKLELVEWLNFMLPHINLPLDASDEELRACLIDGTVLCSMLDKLCPGAVQGGNSKPIVPNIESFLITLDELALPGFEPSALEQGSIAPVLHCLSTLRASFDLSIGDEYTQNNSRKKWNLYEVDSLDGINNLSGQKFQDFQNGSVVSVPSYGLNSHTQYEDHEGQEKNHDVSGSNILELIKSKNLENVSTQSLFNMINGILDGSVETKNGDVSHQVAYILRKVVQVLEQRILTHAGNLKHQSNLLKAREEKFLSKLRVLETLATGTTEENEVVMNQLQRLKIEMFKVEEMKNCEEHDKMALKEQKALCDVELSNLKDELEKAKREHENQCLQLETNAKEEKTKFEEKLNELEYLLADSRKNVKELETFSESKSLRWKKKEFVYQNFVDDLLRAFQELRISVESIKREVLNTKGNYVEDFNFLGMKFKGLADVAQNYNAVLNENRRLYNEVQDLKGNIRVYCRIRPFLPGQSKKLTTVEYIGENGELVIINPAKQGKDNRRLFKFNKVFGPTCSQEDVFLDTQPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPDVSLRAEWGVNYRALNDLFEISQSRKGSISYEIGVQMVEIYNEQVRDLLSTSGLPKRLGIWNTTQPNGLAVPDAGMHPVRSTGDVLDLMKIGSTNRTVGATALNERSSRSHSVLTIHVRGVDLETDAILRGSLHLIDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIFALAQKNSHIPYRNSKLTQVLQSSLGGQAKTLMFVQINPDVESYSETVSTLKFAERVSGVELGAARSNKEGRYVRELMDQVAVLKDTIANKDEEIERLQLLKTNGNGVKHGVGSLRYESFSPIRHSSITPRQSQKPSGRKGLGLTNKAASDMDNFSDYDRRSEAGSLQSMEDFRHHKRSGSGSHLFLEDFRHHKRSESGSHLSVEDFRHQKESSSQSRALSQNVTDDVDLLGFGNADSDERLSDISDGGLSMGTETDGSICSVVEYTLFPEVLKPSDISFADTKYPESTLDVKRPAENATTGGKSLVPIPEKTNTQSKTGSRPPQKPVQAKPSRVSLTKSSSKAPSASSAKKTIVGSSLSMKSSKRWK 1096
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2644587 2658237 + Lsi09G002550.1 Lsi09g00255 669868

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00255 1096 Coils Coil 391 411 - -
Lsi09g00255 1096 Coils Coil 309 365 - -
Lsi09g00255 1096 MobiDBLite consensus disorder prediction 925 941 - -
Lsi09g00255 1096 MobiDBLite consensus disorder prediction 851 891 - -
Lsi09g00255 1096 Gene3D Kinesin motor domain 403 790 IPR036961 -
Lsi09g00255 1096 ProSiteProfiles Kinesin motor domain profile. 460 788 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lsi09g00255 1096 MobiDBLite consensus disorder prediction 925 980 - -
Lsi09g00255 1096 Pfam Kinesin motor domain 466 786 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lsi09g00255 1096 Coils Coil 433 460 - -
Lsi09g00255 1096 SMART kinesin_4 458 796 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lsi09g00255 1096 PANTHER KINESIN-LIKE PROTEIN KLP-3 8 1096 - -
Lsi09g00255 1096 MobiDBLite consensus disorder prediction 1035 1096 - -
Lsi09g00255 1096 Coils Coil 802 829 - -
Lsi09g00255 1096 PANTHER KINESIN-4-LIKE ISOFORM X1 8 1096 - -
Lsi09g00255 1096 PRINTS Kinesin heavy chain signature 535 556 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lsi09g00255 1096 PRINTS Kinesin heavy chain signature 658 675 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lsi09g00255 1096 PRINTS Kinesin heavy chain signature 738 759 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lsi09g00255 1096 PRINTS Kinesin heavy chain signature 689 707 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lsi09g00255 1096 SUPERFAMILY Calponin-homology domain, CH-domain 6 101 IPR036872 -
Lsi09g00255 1096 MobiDBLite consensus disorder prediction 851 868 - -
Lsi09g00255 1096 ProSitePatterns Kinesin motor domain signature. 688 699 IPR019821 GO:0003777|GO:0005524|GO:0007018
Lsi09g00255 1096 Gene3D - 2 106 IPR036872 -
Lsi09g00255 1096 MobiDBLite consensus disorder prediction 1019 1096 - -
Lsi09g00255 1096 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 460 826 IPR027417 -
Lsi09g00255 1096 ProSiteProfiles Calponin homology (CH) domain profile. 4 106 IPR001715 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00255 K10406 KIFC2_3; kinesin family member C2/C3 - csv:101218386 1962.58
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01653 Lsi-Chr3:27709178 Lsi09g00255 Lsi-Chr9:2644587 6.94E-53 dispersed
Lsi06g00073 Lsi-Chr6:643076 Lsi09g00255 Lsi-Chr9:2644587 6.89E-09 dispersed
Lsi09g00255 Lsi-Chr9:2644587 Lsi11g00545 Lsi-Chr11:5675962 9.18E-95 dispersed
Lsi09g00255 Lsi-Chr9:2644587 Lsi04g01248 Lsi-Chr4:19443359 5.41E-93 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g320 Blo02g01110 Blo03g00212 Bda06g00112 Bda08g00516 Bpe05g00646 Bpe07g00107 . Bma14g00667 . . Cma02g01449 Cma15g01228 Car02g01216 Car15g01107 . . Cpe05g00339 . . . . . . . Cla10g00365 Cam10g0377 Cec10g0397 Cco10g0390 Clacu10g0383 Cmu10g1218 Cre10g0632 Cone8ag0301 Cone12ag0307 . . . Csa05g00279 Chy09g01230 . . . . . . Bpe11g00603 Bma05g00820 Bma12g00075 . Cmo02g01485 Cmo15g01292 . . . . . Cpe13g00155 Bhi12g00265 . . . . . Lcy12g1649 Cla01g00260 . Cec01g0258 Cco01g0273 . . Cre09g2254 Lsi09g00255 . . Cme09g01765
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002869 5 3 4 3 3 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 5 1 2 54
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00255 Lsi_Chr09 FPKM 87.529251 91.695839 72.050797 73.531761 185.0112 194.990616 179.101288 7.864979 7.903191 8.710485