Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00256 ATGTGTCAAGGAAACTGTGAAAGATTTGAGAAAATGAACAAACAGAATAAGCCTTGTGTAAGCAATCGGCCATCAATATATTACTGGTGGAGACCAGATGAGGGGATATCTTCTGAGCTGGCTGATTTTATCCTTGAAAATGATACCTCCAACACTTGTTATGCCAAACACAGTAAGGATGGCAGTACTATAAATGAACCTAAGTCTTCTGAGATATTGAGCACAACTCAGATCATTTCAATTTTTGGCCAAGTATTGAATCTTGCTAGTCGTCCTTTTACCTTTTTCCAACCAAAGAGGGTCTTGAACCAAGACAATGATGATTCCAATGATGTTACCTTCAGTAGTGTGGTTGAAGTTAATGGCAAAACAGATACTTCACCTGAAATTAAAAACTTCTGTGTTGATATAAGGACTGATGGCCAATGTTCTCCTCTGGTGCAGCCTACATTGGGCTTGAAGTGTCTGACAGTAACTCAGAAGATGTCTTTGTTAGAACCTTGTAAATATCATTCCACGCCATCATTTTGGAGTCTACTAAATGGTGGTAGTGACATGTCAGCTAAATCCTGGAAAGGAAAAGGCCTAACTAGTGTACGAATCTCACAGGATATCGGGAAGATATATGGATGGATGAATCGTGTAAGTCATACTGAAGCAGGCTACCCTGTGAAAGTTGCTAATACTGGAAGCATGAAAGCCAATGCATTCAAGGCTAGAGATGGTCTTCATGAAGCAGGGGTCTGCATTTCAGGAGATTCAAGTTTTCTTGTTCACGAGTTGATTAGTGAAACTTCAAGGAATACTCCTATGTTCCAATCAATCAATGTATCATCTTTGTTCATCCGAGAGTTGGAAATAAAAATGTTAGAAAATGTTTATATGGCCTCACGTATCCTTATGTTTGTTCAAGATAATAAGGCAGATGGCAGTATAGTAGAGAGCCCAAATCCAGATATTTTGGCAGCTCATTCAGTACCTTCCAAAGATGGTGCATTAGACAATTTAGACTACAGGCAGAAGACTAATAGCAGTGAAGAACATGAGAATAAAACCAAAAAGTCGGACAATCTCATTGTTGAAAATGAGTACAACAGAGAGGATTCCTCACTGACCCGTGCAAAATCTTGTTACACTATAGCTAAGCAAGAACATGCCTTTGCAGGGGCGTTGGCTGGTGTATTTGTCAGTCTTTGTCTACATCCTGTTGATACAATCAAAACAGTGGTTCAGTCTTTTCATGCAGAACAGAAGTCTCTCAGTTACATTGGAAAATCAATTGTCTCTGATCGAGGTTTAAGTGGACTTTATCGTGGAATCTCCACCAACATTGCTTCTTCAGCTCCGATATCTGCTGTTTACACTTTCACATATGAATCAGTTAAAGGAGCTTTGCTTCCACTTCTCCAAGAGTTATGGTTTTCTGGCAATGAAAGGTGCTACAAAAACTACATATGGCCCCCTTCTGCTAACGTTTCATGGCAAATGAAACTTGTGGGCCTGGGACTGACTCCAAGACTGGTAATGTACATGTCTCAAGGTGCAATCTTCTTCACCTCTTATGAATTTTTGAAGAGACTTTTTTCTCTTGAGGTGCCTCGACGTGATACTGCAAGAGTCCAACACTGA 1629 39.96 MCQGNCERFEKMNKQNKPCVSNRPSIYYWWRPDEGISSELADFILENDTSNTCYAKHSKDGSTINEPKSSEILSTTQIISIFGQVLNLASRPFTFFQPKRVLNQDNDDSNDVTFSSVVEVNGKTDTSPEIKNFCVDIRTDGQCSPLVQPTLGLKCLTVTQKMSLLEPCKYHSTPSFWSLLNGGSDMSAKSWKGKGLTSVRISQDIGKIYGWMNRVSHTEAGYPVKVANTGSMKANAFKARDGLHEAGVCISGDSSFLVHELISETSRNTPMFQSINVSSLFIRELEIKMLENVYMASRILMFVQDNKADGSIVESPNPDILAAHSVPSKDGALDNLDYRQKTNSSEEHENKTKKSDNLIVENEYNREDSSLTRAKSCYTIAKQEHAFAGALAGVFVSLCLHPVDTIKTVVQSFHAEQKSLSYIGKSIVSDRGLSGLYRGISTNIASSAPISAVYTFTYESVKGALLPLLQELWFSGNERCYKNYIWPPSANVSWQMKLVGLGLTPRLVMYMSQGAIFFTSYEFLKRLFSLEVPRRDTARVQH 542
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2660989 2669751 + Lsi09G002560.1 Lsi09g00256 669869

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00256 542 PANTHER S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN 502 540 - -
Lsi09g00256 542 Gene3D Mitochondrial carrier domain 342 492 IPR023395 -
Lsi09g00256 542 SUPERFAMILY Mitochondrial carrier 384 528 IPR023395 -
Lsi09g00256 542 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN 12 471 - -
Lsi09g00256 542 Pfam Mitochondrial carrier protein 384 465 IPR018108 -
Lsi09g00256 542 ProSiteProfiles Solute carrier (Solcar) repeat profile. 380 464 IPR018108 -
Lsi09g00256 542 PANTHER S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN 12 471 - -
Lsi09g00256 542 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN 502 540 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00256 - - - csv:101216245 808.905
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g00256 Lsi-Chr9:2660989 Lsi06g01417 Lsi-Chr6:24728079 2.54E-08 dispersed
Lsi09g00256 Lsi-Chr9:2660989 Lsi01g00769 Lsi-Chr1:6052900 2.44E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g321 . . . . . . . . . . Cma02g01450 . Car02g01217 . . . Cpe05g00338 . . . . . . . . . . . . . . Cone8ag0303 . . . . Csa05g00280 Chy09g01229 . . . . . Bpe08g01484 . . . . Cmo02g01486 . . . . . . . Bhi12g00262 . . . . . . Cla01g00261 Cam01g0267 Cec01g0259 Cco01g0274 Clacu01g0266 Cmu01g0255 Cre09g2252 Lsi09g00256 . . Cme09g01764
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006178 1 3 1 1 1 0 1 1 1 1 1 0 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 4 6 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00256 Lsi_Chr09 FPKM 1.039511 1.792655 0.683131 0.607778 35.844086 34.64056 33.860943 2.983694 3.570468 4.584646