Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00260 GAGTGCGAGAGAAGGCGTGGCGATTACTTCTTGCCGGGTCCACATCCTATAAAAGCCCTTTCTCGGCTACCCTCTTTCTTGCCCGCGAAAACACAAATTCCATTTCTTCTCAATTGGGGGGGACACAAAAATCCCAGTCACAGAGAGATTCGACGACTGAAAGTCAGCCATTTAGACGAAACCGCCGCTCATTTCACGATGGGAAACCGAAGATTTGCGCAGGTTTCCACTAGCGATGAGGAAGATGAAGTACCAACTACGAAGCAGCAATCCTCCAATTCAGACGACAACTTGCCAATTCGTAGGAAGAGGAAGAAGATGAAGCTTCAAGAGGAGGAGGAAGAGGTGGCAGAAGGGGATGAGAAGCCTCGCAGGAGTAGAAAAAGTACTAACAAGGGAGAGAAGGAGGTGGAAGCGTCTAAACAGCAGCAGGCGGAAGATGAAGATGAGGATGATCAGTCGCAAGAGGATGCGAAGCCGATTGGGGATGTTGTTAGGGTTTCTGGAAAAGGAAGGGGAAGGAAGAATCATTACAATGCGTTTGAATATGATGGCAACAGATATGATCTTGAGGATCCGGTACTTCTAGTTCCTGAGGACAAGGATCAAAAACCTTATGTGGCAATCATTAAGGTAACATACTTACTTTTTTTTCTTGTTCTTATATGTCAGTTCTTGTTTTTATATGATATTACTCAGAACAAAGATGGCATGATGGTCACTGGGCAGTGGTTTTACCGTCCTGAAGAAGCTGAAAAAAAGGGTGGTGGAAGTTGGCAATCACATGATACTCGAGAGCTGTTTTATAGTTTCCACCGTGATCAGGTTCCTGCAGAATCTGTAATGCACAAATGTGTTGTGCATTTTGTTCCATTGCATAAGCAACTTCCAATTCGTAAGCAACATCCTGGATTTATTGTGCGAAAAGTGTACGACACAGTTGAAAGAAAACTTTGGAAGCTAACCGATAAGGATTACGAAGATTCTAAGCAGCAGGAAATTGATGAACTTGTCAAGAAGACAATGTCACGGTTGGGAGATCTCCCTGATATTGAGCCTGAAGATGCCCCAGCTGATCAAGAAGATCAGTTGAAAACTAAAAGGAGTTTCAAGAGAAAGAACATTTCTCCTCTTGATGTTACAAGAGACGAATCAGAGACAACCAGATATGATCATGGCTCAAAAGCTGAAACACCAGGAAGCTGTACCACAAATCGATCAGAGTACTACCCCATTTTAGAAATATTTGATGTTCTAACAGGTGAAACTCATCGAGATAGATGGTTGGAAAAACTTTTGGAGGGGGTTCAGTACATATGTCATTCTCCTGAAAAGGCACGTGAAGGTGATATAGGAAAAACTGCTGCTAATGGTGTCAACCTTGAAAATAAAAATCCAGAATTGTCAATTGCAGCAGAGAACAATGCTAAGAGCGGAAAGTCTTTTCTCTGGCCCGATGCAGCTGTTCCGGCAATAACTGCTCTTGAAAAGGTGTCCAATGATGCTCTGTCTGCTGATTTTCAGAAGTATAACCAAAAAATGCGGCAATTGGTGTTCAATCTCAAGAATACTCGTTTACTAGCTCAACGGCTGTTAAATGGAGAGTTGGAACCATCGAAAATCCTGAATATGTCACCCAATGAGCTCAAGGTAATGCAATTTCCTTTTGAAGGATTGACTGCCGAGGAGTCGGCAGCTACTAAAGAGCCTGATGAGTCTGAGCGTATGCAGGTCAATGCTCGGTGTTCAAGATGCACAGAATGTAAAGTGGGTGTCAGGGACATCATCCAAACAGGACATGGACAACGATATAAGTTGGAGTGCATCGCCTGTGGTCATTCTTGGTATGCCTCTAGGGATGAACTATCCATGCTGACAATAGATGCGGCAACTAATTCTACCAAGAGTGTTGGAACCGCACCATGGGCAACTGCTAAATTTGAAGATGTGGAGAAGAGTCTACTCAGTCCTCGTGAACCCGAAAAAGCCGCCGAGGACCTCTTCAAGAAAACAAGTGAAGCATATATTCCTGTAGTGGATAGCCAGAAATCTAACAAGTCTAAAAAGGAAGATAATACAGAACCTGCTAAAAATGCACAGTAA 2103 43.37 ECERRRGDYFLPGPHPIKALSRLPSFLPAKTQIPFLLNWGGHKNPSHREIRRLKVSHLDETAAHFTMGNRRFAQVSTSDEEDEVPTTKQQSSNSDDNLPIRRKRKKMKLQEEEEEVAEGDEKPRRSRKSTNKGEKEVEASKQQQAEDEDEDDQSQEDAKPIGDVVRVSGKGRGRKNHYNAFEYDGNRYDLEDPVLLVPEDKDQKPYVAIIKVTYLLFFLVLICQFLFLYDITQNKDGMMVTGQWFYRPEEAEKKGGGSWQSHDTRELFYSFHRDQVPAESVMHKCVVHFVPLHKQLPIRKQHPGFIVRKVYDTVERKLWKLTDKDYEDSKQQEIDELVKKTMSRLGDLPDIEPEDAPADQEDQLKTKRSFKRKNISPLDVTRDESETTRYDHGSKAETPGSCTTNRSEYYPILEIFDVLTGETHRDRWLEKLLEGVQYICHSPEKAREGDIGKTAANGVNLENKNPELSIAAENNAKSGKSFLWPDAAVPAITALEKVSNDALSADFQKYNQKMRQLVFNLKNTRLLAQRLLNGELEPSKILNMSPNELKVMQFPFEGLTAEESAATKEPDESERMQVNARCSRCTECKVGVRDIIQTGHGQRYKLECIACGHSWYASRDELSMLTIDAATNSTKSVGTAPWATAKFEDVEKSLLSPREPEKAAEDLFKKTSEAYIPVVDSQKSNKSKKEDNTEPAKNAQ 700
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2713822 2720590 - Lsi09G002600.1 Lsi09g00260 669873

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00260 700 PANTHER BROMO-ADJACENT HOMOLOGY (BAH) DOMAIN-CONTAINING PROTEIN 67 697 - -
Lsi09g00260 700 Pfam Transcription factor S-II (TFIIS), central domain 420 550 IPR003618 GO:0006351
Lsi09g00260 700 Gene3D - 170 409 IPR043151 -
Lsi09g00260 700 SMART BAH_4 186 322 IPR001025 GO:0003682
Lsi09g00260 700 MobiDBLite consensus disorder prediction 679 700 - -
Lsi09g00260 700 MobiDBLite consensus disorder prediction 347 403 - -
Lsi09g00260 700 ProSiteProfiles TFIIS central domain profile. 424 577 IPR003618 GO:0006351
Lsi09g00260 700 PANTHER BROMO-ADJACENT HOMOLOGY (BAH) DOMAIN-CONTAINING PROTEIN 67 697 - -
Lsi09g00260 700 SMART mid_6 422 565 IPR003618 GO:0006351
Lsi09g00260 700 MobiDBLite consensus disorder prediction 683 700 - -
Lsi09g00260 700 MobiDBLite consensus disorder prediction 358 393 - -
Lsi09g00260 700 Pfam BAH domain 188 320 IPR001025 GO:0003682
Lsi09g00260 700 MobiDBLite consensus disorder prediction 97 142 - -
Lsi09g00260 700 CDD BAH_plant_3 168 331 - -
Lsi09g00260 700 ProSiteProfiles BAH domain profile. 186 322 IPR001025 GO:0003682
Lsi09g00260 700 Gene3D - 461 551 IPR036575 GO:0006351
Lsi09g00260 700 SUPERFAMILY Elongation factor TFIIS domain 2 492 549 IPR036575 GO:0006351
Lsi09g00260 700 Coils Coil 100 122 - -
Lsi09g00260 700 MobiDBLite consensus disorder prediction 73 170 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00260 - - - csv:101218620 1105.12
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01422 Lsi-Chr3:25165388 Lsi09g00260 Lsi-Chr9:2713822 4.48E-19 dispersed
Lsi09g00260 Lsi-Chr9:2713822 Lsi11g01424 Lsi-Chr11:22809056 1.96E-06 dispersed
Lsi09g00260 Lsi-Chr9:2713822 Lsi06g01533 Lsi-Chr6:25709545 7.71E-21 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g322 . . . . . . . . . . Cma02g01453 Cma15g01226 Car02g01219 Car15g01106 . . Cpe05g00334 . . . . . . . . . . . . . . Cone8ag0305 . Cone6ag0779 Cone9ag0784 . Csa05g00281 Chy09g01228 . . . . . . . . . . Cmo02g01488 Cmo15g01291 . . . . . Cpe13g00157 Bhi12g00260 . . . . . . Cla01g00265 Cam01g0272 Cec01g0265 Cco01g0280 Clacu01g0272 Cmu01g0260 Cre09g2248 Lsi09g00260 . . Cme09g01763
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006093 0 1 1 0 0 1 1 1 1 1 1 1 2 1 1 1 1 4 3 1 1 1 1 1 1 1 1 4 4 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00260 Lsi_Chr09 FPKM 1.188889 0.991614 2.210488 1.735787 3.290931 3.17582 3.196877 3.283091 2.950988 3.931684