Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00261 ATGGCTCTCGCTTCACACACTGGTTCGGCTCACCGGATTGGTGCTGAGACTGTACGATGCAGAGGAGGAAATATGGCTTTCAACTTCCCGACTCATTTGGAGTCGTTGAAGATGAAGGAGAATCCTATTGGTTCATCTTCTCTATCGTGTAGCTCTGCTAATATCATGCAGGGTTTGCATATAGACAGCGCGAGGATGGCGACGAAGCGAGGAGGCAGGGTGATTGTTGCTGCCAGTCCTCCAACCGAGGACGCTACAGTGGCAACTGAACCGTTGACAAAAGAGGATCTTGTGGCTTATTTAGCTTCTGGATGCAAGCCTAAGGAAAAGTGGAGAATTGGTACAGAGCATGAGAAGTTTGGTTTTGAGATTGAAACTTTACGTCCCATGACGTATGACCAAATAGCTGGATTGCTAAATGGGATTGCAGAAAGGTTTGACTGGGAAAAAATAATGGAGGGTGACAACATTATAGGGCTTCAGCAGGGAAAGCAAAGTATTTCACTGGAGCCTGGTGGTCAATTTGAACTTAGTGGTGCCCCTCTTGAAACTTTGCATCAAACCTGTGCTGAAGTTAATTCACACCTTTACCAGGTGAAAGCTGTTGCTGAGGAAATGGGTATTGGATTTTTAGGAATTGGATTCCAGCCTAAATGGAGACGGGAAGACATACCTATAATGCCCAAGGGACGATATGAGATTATGAGGAATTACATGCCCAAAGTTGGTTCGCTTGGACTGGATATGATGTTTAGAACATGCACTGTGCAGGTTAATCTAGATTTTGATTCAGAAGTTGACATGATCAAAAAGTTCCGAGCGGGTCTTGCTTTACAGCCTATAGCAACTGCTCTGTTTGCCAATTCACCATTTACTGAAGGAAAGCCAAATGGCTATTTGAGCATGAGAAGCCAGATCTGGACTGATACTGATAATGACCGCACTGGCATGCTTCCATTTGTTTTTGATGACTCATTTGGATTTGAGAAGTATGTTGATTATGCTCTTGACGTTCCAATGTATTTCATATACCGGAAAAAGAAGTATATTGACTGTTCTGGAATGTCCTTCAGGGATTTTATGGCAGGAAAGCTTCCTGCAGCTCCTGGAGAACTTCCTACCCTTACTGATTGGGAAAATCATTTGACTACAATATTTCCAGAGGTCAGACTGAAGAGATATTTGGAGATGAGGGGTAGTGATGGAGGCCCTTGGAGGAGATTATGTGCTCTGCCAGCATTTTGGGTTGGTTTGTTATATGACGAAGTTTCCCTGCAAAATATTTTAGACATAACAGCTGACTGGACACAGGAAGAAAGGCAGATGTTGAGGAATAAGGTTCCAATAACTGGTCTTAATACACCGTTTCGTGATGGGTTGCTGAAGCACGTTGCTCAAGATATTGTTAAGTTAGCAAAGGATGGCTTAGAGAGAAGAGGTTTCAAGGAGTCAGGCTTCTTGAATGAGGTGGCTGAAGTGGCTAGGACAGGTGTGACACCAGCTGAAAAGCTGTTAGAATTGTATAATGGGAAATGGGGACAAAATGTCGATCCAGTTTTCGAGGAACTTCTATATTGA 1578 43.54 MALASHTGSAHRIGAETVRCRGGNMAFNFPTHLESLKMKENPIGSSSLSCSSANIMQGLHIDSARMATKRGGRVIVAASPPTEDATVATEPLTKEDLVAYLASGCKPKEKWRIGTEHEKFGFEIETLRPMTYDQIAGLLNGIAERFDWEKIMEGDNIIGLQQGKQSISLEPGGQFELSGAPLETLHQTCAEVNSHLYQVKAVAEEMGIGFLGIGFQPKWRREDIPIMPKGRYEIMRNYMPKVGSLGLDMMFRTCTVQVNLDFDSEVDMIKKFRAGLALQPIATALFANSPFTEGKPNGYLSMRSQIWTDTDNDRTGMLPFVFDDSFGFEKYVDYALDVPMYFIYRKKKYIDCSGMSFRDFMAGKLPAAPGELPTLTDWENHLTTIFPEVRLKRYLEMRGSDGGPWRRLCALPAFWVGLLYDEVSLQNILDITADWTQEERQMLRNKVPITGLNTPFRDGLLKHVAQDIVKLAKDGLERRGFKESGFLNEVAEVARTGVTPAEKLLELYNGKWGQNVDPVFEELLY 525
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2724767 2731981 + Lsi09G002610.1 Lsi09g00261 669874

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00261 525 PIRSF GCL 79 525 IPR035434 GO:0004357|GO:0006750
Lsi09g00261 525 Gene3D - 77 525 - -
Lsi09g00261 525 SUPERFAMILY Glutamine synthetase/guanido kinase 103 523 IPR014746 GO:0003824
Lsi09g00261 525 PANTHER GLUTAMATE--CYSTEINE LIGASE 1 525 - -
Lsi09g00261 525 PANTHER GLUTAMATE--CYSTEINE LIGASE, CHLOROPLASTIC 1 525 IPR035434 GO:0004357|GO:0006750
Lsi09g00261 525 TIGRFAM glu_cys_lig_pln: glutamate--cysteine ligase 91 525 IPR011556 GO:0004357|GO:0006750
Lsi09g00261 525 Pfam Glutamate-cysteine ligase family 2(GCS2) 145 435 IPR006336 GO:0004357|GO:0042398
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00261 K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2] - csv:101218859 1018.45
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g324 . . . Bda08g00517 Bpe05g00644 Bpe07g00110 . . . . Cma02g01454 Cma15g01225 Car02g01220 Car15g01105 . . Cpe05g00333 . . . . . . . . . . . . . . Cone8ag0307 . Cone6ag0777 Cone9ag0782 . Csa05g00283 Chy09g01225 . . . . . . . Bma05g00819 Bma12g00077 . Cmo02g01489 Cmo15g01290 . . . . . Cpe13g00158 Bhi12g00258 . . Lac11g2094 Hepe06g1546 . Lcy12g1653 Cla01g00266 Cam01g0273 Cec01g0266 Cco01g0281 Clacu01g0273 Cmu01g0261 Cre09g2247 Lsi09g00261 . . Cme09g01761
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006691 1 1 1 1 2 1 2 1 1 1 1 1 1 1 1 2 1 2 3 1 1 2 1 1 1 1 1 1 2 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00261 Lsi_Chr09 FPKM 1.036513 1.451148 0.682221 0.899524 24.874432 21.856503 23.427874 0.0 0.135282 0.0