Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00265 ATGGATGGGAGGGAAGGCATGGCATTGTCTGGTGGCTCTGCTTCTTATTACATACATAGGGGAGGAGGGGTTGGTGGCTCTGGATCAGGGCTGCCTACGGCTGGATCACATGCCTCCCCTGTATTCCGGCCGATGGCTAACCAGGGTGTTTTGTCTCACTCAAATCTCAGAGGCAACTCAGTTGGATCAACATATGCTGTTGAGCCATCCCATTCGAATTATCTTCGTGGGATGGGTATCAATGTCTCAGCTGGAGTGAACTCTGGTGAACCTGTAAAGAAGAAGAGAGGGAGGCCCCGGAAATATGCCCCAGATGGGCAGGTCTCATTGGGTTTGTCTCCCATGTCTGCTGGTTCTAAGCTCACTCCGGGTTCGAATTCGTCGACCCCCAGACGACGTCGAGGGCGGCCACCTGGTTCTGGAAGGAAACAACAATTAGCGCTCCTTGGTGATTGGATGAACAATTCAGCTGGACTAGCCTTTGCCCCACATGTTATTCACGTTGGAGCTGGAGAAGACATTGTAGCAAAAGTGTTGTCATTCGCACAGCAGAGGCCAAGGGCTCTTTGTGTCTTGTCTGGCAATGGCACTGTTTCTTCTGTAACACTACGTCAGCCTGCATCTACTGGCGTGAGCGTCACATACGAGGGCCATTTCCAGATATTGTGCTTGTCTGGTTCTTACTTGGTGGCTGAAGATGGCGGTCCTCGAAGTAGGACGGGAGGTATTAGTGTTTCTCTCTCTAGTCCTGATGGTCATGTCGTTGGTGGCGGTGTTGCCGTTCTTATGGCAGCTGGCCCTGTTCAGGTAGTTGTATGTAGTTTTGTTTATGGTGCAAAGATAAAAAACAAGCAGGTGGCTGGTCCGAAAAGCAATGATGGTTCGGGGAATGAGCACCACGATAATTTGGTTTCGCCCACAAGTGCCCCATCTGCCCAAGCCTACAATCCATCTCCAATTGGTGTTTGGCCCGGTTCCCGTTCGGTCGATGTCAGAAACCCTCGTACTGGAATTGACTTGACACGAGGATGA 1032 51.16 MDGREGMALSGGSASYYIHRGGGVGGSGSGLPTAGSHASPVFRPMANQGVLSHSNLRGNSVGSTYAVEPSHSNYLRGMGINVSAGVNSGEPVKKKRGRPRKYAPDGQVSLGLSPMSAGSKLTPGSNSSTPRRRRGRPPGSGRKQQLALLGDWMNNSAGLAFAPHVIHVGAGEDIVAKVLSFAQQRPRALCVLSGNGTVSSVTLRQPASTGVSVTYEGHFQILCLSGSYLVAEDGGPRSRTGGISVSLSSPDGHVVGGGVAVLMAAGPVQVVVCSFVYGAKIKNKQVAGPKSNDGSGNEHHDNLVSPTSAPSAQAYNPSPIGVWPGSRSVDVRNPRTGIDLTRG 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2791224 2798314 + Lsi09G002650.1 Lsi09g00265 669878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00265 343 ProSiteProfiles PPC domain profile profile. 158 299 IPR005175 -
Lsi09g00265 343 PANTHER AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN 1 343 - -
Lsi09g00265 343 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 1 343 IPR039605 GO:0003680
Lsi09g00265 343 MobiDBLite consensus disorder prediction 285 343 - -
Lsi09g00265 343 Gene3D - 163 287 - -
Lsi09g00265 343 MobiDBLite consensus disorder prediction 112 133 - -
Lsi09g00265 343 MobiDBLite consensus disorder prediction 288 315 - -
Lsi09g00265 343 SUPERFAMILY AF0104/ALDC/Ptd012-like 161 276 - -
Lsi09g00265 343 MobiDBLite consensus disorder prediction 85 143 - -
Lsi09g00265 343 CDD DUF296 163 275 IPR005175 -
Lsi09g00265 343 Pfam Plants and Prokaryotes Conserved (PCC) domain 163 276 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g00265 Lsi-Chr9:2791224 Lsi09g00368 Lsi-Chr9:3836578 6.08E-57 dispersed
Lsi09g00265 Lsi-Chr9:2791224 Lsi09g01558 Lsi-Chr9:23699625 5.36E-83 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00265 - - csv:101219973 634.024