Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00268 ATGCTTCATTTTCTTTTATCTTCCATGTTCTGTATCTCATCAATTCGCTCTCTACTCAGTAGAAATTTCTTCAGCGTTCGATCATTATCTTCTTCACCTCTGGTTTCAAATACCCGATTCTTCCCCGATTCGAAGCAAACCCTTTTTCATAATCCGCAGTGTTTTTCTGTAACTCGTTTCGTTTCACCAATTAACTCAGATTCTTCGCGTATCGGCTCGTTTTCGACTCGCTTGGATCATACTATGGCCACCCCTTCCAAGACTTCAGTCCATGACTTCACCGTCAAGGATGCTAGAGGAAAGGATGTTGACCTCAGCATTTACAAAGGAAAGGTCCTGTTGATTGTCAACGTCGCTTCCCAATGTGGCTTGACTAATTCGAATTACACTGAACTGAGTCAGCTGTATGAAAAATACAAGGGCCACGGATTTGAGATTCTTGCATTTCCGTGCAACCAATTTGGAAGCCAGGAACCAGGAACCAATGAAGAGATTGTGCAGTTTGCTTGCACCCGTTTTAAGGCTGAGTACCCCATTTTTGACAAGGTGGATGTGAATGGAGACAAAGCTGCTCCTCTGTACAAGTTCTTGAAGTCAAGCAAAGGTGGGCTCTTCACAGACGCCATTAAGTGGAACTTCTCCAAGTTCTTGGTGGACAAAGATGGAAACGTTGTTGATCGTTACGCCCCGACAACTTCCCCACTCAGCATTGAGAAGGATGTGAAGAAGCTGCTTGGAGTTGCTTAA 747 44.18 MLHFLLSSMFCISSIRSLLSRNFFSVRSLSSSPLVSNTRFFPDSKQTLFHNPQCFSVTRFVSPINSDSSRIGSFSTRLDHTMATPSKTSVHDFTVKDARGKDVDLSIYKGKVLLIVNVASQCGLTNSNYTELSQLYEKYKGHGFEILAFPCNQFGSQEPGTNEEIVQFACTRFKAEYPIFDKVDVNGDKAAPLYKFLKSSKGGLFTDAIKWNFSKFLVDKDGNVVDRYAPTTSPLSIEKDVKKLLGVA 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2805836 2808197 - Lsi09G002680.1 Lsi09g00268 669881

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00268 248 CDD GSH_Peroxidase 89 241 IPR000889 GO:0004602|GO:0006979
Lsi09g00268 248 Gene3D Glutaredoxin 81 246 - -
Lsi09g00268 248 ProSiteProfiles Thioredoxin domain profile. 84 246 IPR013766 -
Lsi09g00268 248 PANTHER GLUTATHIONE PEROXIDASE 66 247 - -
Lsi09g00268 248 PRINTS Glutathione peroxidase family signature 144 160 IPR000889 GO:0004602|GO:0006979
Lsi09g00268 248 PRINTS Glutathione peroxidase family signature 209 218 IPR000889 GO:0004602|GO:0006979
Lsi09g00268 248 PRINTS Glutathione peroxidase family signature 108 125 IPR000889 GO:0004602|GO:0006979
Lsi09g00268 248 PANTHER GLUTATHIONE PEROXIDASE 66 247 IPR000889 GO:0004602|GO:0006979
Lsi09g00268 248 SUPERFAMILY Thioredoxin-like 89 245 IPR036249 -
Lsi09g00268 248 ProSitePatterns Glutathione peroxidases active site. 110 125 IPR029759 -
Lsi09g00268 248 ProSitePatterns Glutathione peroxidases signature 2. 147 154 IPR029760 -
Lsi09g00268 248 Pfam Glutathione peroxidase 90 198 IPR000889 GO:0004602|GO:0006979
Lsi09g00268 248 ProSiteProfiles Glutathione peroxidase profile. 80 248 IPR000889 GO:0004602|GO:0006979
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00268 K00432 gpx, btuE, bsaA; glutathione peroxidase [EC:1.11.1.9] - csv:101220688 394.815
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02309 Lsi-Chr2:29691663 Lsi09g00268 Lsi-Chr9:2805836 1.28E-78 dispersed
Lsi04g01348 Lsi-Chr4:21240467 Lsi09g00268 Lsi-Chr9:2805836 2.68E-71 dispersed
Lsi05g00903 Lsi-Chr5:16209629 Lsi09g00268 Lsi-Chr9:2805836 5.14E-78 dispersed
Lsi07g00034 Lsi-Chr7:381986 Lsi09g00268 Lsi-Chr9:2805836 3.50E-89 dispersed
Lsi09g00266 Lsi-Chr9:2798169 Lsi09g00268 Lsi-Chr9:2805836 1.52E-87 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g331 . . . . . . . . . . Cma02g01461 Cma15g01220 Car02g01226 Car15g01101 . . . . . . . . . . . . . . . . . Cone8ag0312 . Cone6ag0772 Cone9ag0778 . Csa05g00290 Chy09g01216 . . . . Bda09g00043 . . . Bma12g00376 . Cmo02g01496 Cmo15g01286 . . . . . . Bhi12g00244 . . . . . . Cla01g00272 Cam01g0281 Cec01g0273 Cco01g0288 Clacu01g0280 Cmu01g0268 Cre09g2241 Lsi09g00268 . . Cme09g01753
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000163 11 8 6 9 6 6 7 6 6 5 4 6 8 5 6 8 6 11 3 6 6 7 6 5 5 6 5 14 6 5 198
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00268 Lsi_Chr09 FPKM 3.454902 5.775668 4.96091 4.841376 4.36111 2.801089 4.134102 1.758342 3.402499 2.384056