Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00270 ATGTTGAAGTTGCCGAGGCGGAAACGATCGCCGGCCGCAACAGAGGAGACTCCAAAAAATGCAACGGTAATTAACGACGACGAGACCGCGGCGGAGAAGGCGAAGGCAGTGGTGTGTGTTAGCGGCATGAGTTGCTCTGCTTGCGCTGTTTCAGTTGAGAATTCCATCAAACACCTTCCAGGCATTCTCGATGCGGCCGTCGATTTCTTGAACGATAGGGCTCAAATCCTCTATCTCTCCAATCTCATCGACGAAGAGACAATACTTAAAGCAATTGAAAATGCTGGATTTCAAGCTACAATATCAAACGACGGGACCGATTATCGATCAAGAGAAGTATGTCGAATCCGAGTAAATGGGATGGGCTGCAATTCTTGCTCTTCCATGGTAGAGTCAGTTTTGGAAGCAATGTATGGAGTTCAAAAGGCTCATATTGCTTTGTTGAAAGAGGAAGCAGAAGTTTACTATGATCCAAAGGTTGTTAATTGCAACCAGTTCATTGTAGCCATACAAGATATTGGGTTTGAAGCCTTACCTATAACCATTGGTCAACACATTACCAAGATTGAGCTAAAGATTGATGGTATGCATAATGAAAACTCATCAACAAAAGTTAAAGAATCACTCGAATCGGTCCCAGGAATTGACGATATTAATGTCGATATGACATTAAGTAAAGTTACTATATCTTATAGGCCTGATATAACAGGACCTAGAACTTTCATTGAAGTCCTCGAGTCGATCAAATCCGAGCAGTTCAAGGCAACAATATATCCCGAAGAAACGGGACAAGAAACTCGTAAGGAGAAAGAGATTAAGCAACATTATAAGTACCTTTTATGGAGCTCTGCTCTTTCTATACCTGTTTTCTTTACTTCAATGGTCTTCATGTATATACCTGGAATTAAGCAAACTTTAGATATCAAAGTTGTCAATATGATGAACGTTGGACATATTATCAGGTGGAATTTGTCGACTCCGGTACAGTTCATTGTAGGTTCGAGATTCTACATCGGATCATACAAAGCATTGCGCCGTGGTTCTGCTAACATGGATGTATTGGTTACTTTAGGAACAAATGCAGCTTATTTCTATTCTGTTTATATAGTGTTAAGAGCAGCTACATCTCCTACTTTCAATGGTACTGATTTCTTTGAAACTAGTTCAATGTTGATCACATTCATTTTACTTGGTAAGTATTTGGAGGTTTTAGCAAAAGGAAAGACCTCTGAGGCTATTGCCAAGCTTAAACACTTGGCTCCCGAGACGGCGACACTCTTGACTCTCGATGGGCACGGAAACGTGATTGGCGAAGTAGAAATCAGTAGTGAGTTGATTCAAAAGAATGATGTAATCAAGATTACGCCGGGTGCGAGAGTAGCTTCTGATGGTCTCGTCGTATGGGGCGAAAGTCATGTTAATGAGAGTATGATCACAGGAGAAGCGAAACCGGTAGCGAAAAGGACGGGCGACAAGGTGATAGGAGGAACTGTGAATGAAAATGGGGTATTGCATATAAAGGCAACACATGTTGGATCAGAGAGTTCTTTAGCGCAAATCGTTCGACTCGTCGAATCGTCCCAATTGGCAAAAGCTCCTATTCAGAAACTTGCTGACCATATCTCCAAGTATTTTGTGCCTCTGGTAATTTTACTTTCTTTTCTTACTTGGATTGTCTGGTTTTTAGCTGGAAAGTTGCATCTCTATCCTAAGTCATGGTTGCCTTCTTCAATGGACAGTTTTGAGTTGGCTCTTCAATTTGGGATATCTGTTATGGTCATAGCTTGCCCTTGTGCTCTTGGACTTGCCACCCCGACTGCCGTGATGGTCGGTACCGGCGTCGGTGCATCTCAAGGTGTACTAATAAAAGGCGGTCAAGCATTAGAATTTGCTCATAAGGTTGGTTGCATTGTGTTTGATAAGACAGGAACTCTAACAATTGGAAAGCCAGTGGTTGTAGATGTAAAACCTATGGATAGTATAGTACTTGAAGAACTGCTTGAACTCACTGCAGCAACCGAGGTTAACAGTGAGCACCCAGTAGCCAAGGCCATTGTTGAATATGCCAAACAATTCAAGAAAGAACAGAATCCCATTTGGCCAGAAGCTCAAGAATTCATATCCATTCCTGGCCATGGAGTAGAAGCCACAATAATGAACAAGAAAATAGTGGTTGGAAACAAGAGCTTGATGATGAACAATGACATTGAAATCCCGGGGGAAGCAGAAAGCTTCCTTGTCAATGCCGAAGGTATGGCACAAACTGCAATTTTGGTGGCCATAGATCGGACGGTGTCGGGAGTTATCGCGGTGTCGGATCCGTTGAAACCGGGTGCCAAAAAAGTTATCTCCATTCTCAAGTCTATGGAAGTGAAGAGCATCATGATAACAGGTGACAATTGGGGTACTGCAAATTCCATTGCCAAAGAAGTTGGCATTGAAACAGTCATTGCAGAGGCCAAACCTCAGCAGAAAGCAGAGGAAGTGAAGAATCTTCAGACAGCGGGACATACGGTGGCGATGGTCGGAGACGGGATCAATGACTCGCCTGCCCTAGTAGCAGCGGATGTCGGGATGGCGATCGGAGCCGGCACGGACATTGCCATTGAGGCAGCAGACATTGTTCTAATGAAAAATGACTTGCAAGATGTTATAACTGCCATTCATCTTTCAAGGAAAACCTTTTCTAGAATTCGTTTGAATTACATTTGGGCTTTAGGTTATAATCTTCTTGCCATACCCATCGCAGCGGGCGTCGTGTTCCCTTCGACTCGGTTTCGGTTACCACCGTGGATCGCGGGAGCCGCCATGGCAGCTTCTTCTGTTAGTGTGGTCTGCAGTTCTTTGATGTTGAAGAAATACAAGAGACCTAAGAAGCTTGATGAAGTTGATCAGATTCAAATGAATGGAATAGTGGTTGAATAA 2925 43.21 MLKLPRRKRSPAATEETPKNATVINDDETAAEKAKAVVCVSGMSCSACAVSVENSIKHLPGILDAAVDFLNDRAQILYLSNLIDEETILKAIENAGFQATISNDGTDYRSREVCRIRVNGMGCNSCSSMVESVLEAMYGVQKAHIALLKEEAEVYYDPKVVNCNQFIVAIQDIGFEALPITIGQHITKIELKIDGMHNENSSTKVKESLESVPGIDDINVDMTLSKVTISYRPDITGPRTFIEVLESIKSEQFKATIYPEETGQETRKEKEIKQHYKYLLWSSALSIPVFFTSMVFMYIPGIKQTLDIKVVNMMNVGHIIRWNLSTPVQFIVGSRFYIGSYKALRRGSANMDVLVTLGTNAAYFYSVYIVLRAATSPTFNGTDFFETSSMLITFILLGKYLEVLAKGKTSEAIAKLKHLAPETATLLTLDGHGNVIGEVEISSELIQKNDVIKITPGARVASDGLVVWGESHVNESMITGEAKPVAKRTGDKVIGGTVNENGVLHIKATHVGSESSLAQIVRLVESSQLAKAPIQKLADHISKYFVPLVILLSFLTWIVWFLAGKLHLYPKSWLPSSMDSFELALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALEFAHKVGCIVFDKTGTLTIGKPVVVDVKPMDSIVLEELLELTAATEVNSEHPVAKAIVEYAKQFKKEQNPIWPEAQEFISIPGHGVEATIMNKKIVVGNKSLMMNNDIEIPGEAESFLVNAEGMAQTAILVAIDRTVSGVIAVSDPLKPGAKKVISILKSMEVKSIMITGDNWGTANSIAKEVGIETVIAEAKPQQKAEEVKNLQTAGHTVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKNDLQDVITAIHLSRKTFSRIRLNYIWALGYNLLAIPIAAGVVFPSTRFRLPPWIAGAAMAASSVSVVCSSLMLKKYKRPKKLDEVDQIQMNGIVVE 974
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2813136 2836753 - Lsi09G002700.1 Lsi09g00270 669883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00270 974 Pfam haloacid dehalogenase-like hydrolase 636 856 - -
Lsi09g00270 974 SUPERFAMILY HMA, heavy metal-associated domain 112 182 IPR036163 GO:0046872
Lsi09g00270 974 Gene3D - 28 107 - -
Lsi09g00270 974 SUPERFAMILY HMA, heavy metal-associated domain 183 249 IPR036163 GO:0046872
Lsi09g00270 974 SUPERFAMILY Calcium ATPase, transmembrane domain M 383 923 IPR023298 -
Lsi09g00270 974 CDD HMA 40 100 IPR006121 GO:0046872
Lsi09g00270 974 CDD P-type_ATPase_Cu-like 279 938 - -
Lsi09g00270 974 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 351 951 IPR027256 GO:0006812|GO:0016021|GO:0019829
Lsi09g00270 974 Pfam E1-E2 ATPase 419 616 - -
Lsi09g00270 974 Gene3D - 605 899 IPR023214 -
Lsi09g00270 974 Gene3D - 111 179 - -
Lsi09g00270 974 ProSitePatterns Heavy-metal-associated domain. 118 148 IPR017969 GO:0046872
Lsi09g00270 974 MobiDBLite consensus disorder prediction 1 26 - -
Lsi09g00270 974 ProSitePatterns Heavy-metal-associated domain. 40 69 IPR017969 GO:0046872
Lsi09g00270 974 Gene3D - 406 528 - -
Lsi09g00270 974 CDD HMA 116 177 IPR006121 GO:0046872
Lsi09g00270 974 Pfam Heavy-metal-associated domain 191 248 IPR006121 GO:0046872
Lsi09g00270 974 Pfam Heavy-metal-associated domain 116 176 IPR006121 GO:0046872
Lsi09g00270 974 Pfam Heavy-metal-associated domain 38 97 IPR006121 GO:0046872
Lsi09g00270 974 ProSitePatterns E1-E2 ATPases phosphorylation site. 640 646 IPR018303 -
Lsi09g00270 974 ProSiteProfiles Heavy-metal-associated domain profile. 113 179 IPR006121 GO:0046872
Lsi09g00270 974 PRINTS P-type cation-transporting ATPase superfamily signature 638 652 - -
Lsi09g00270 974 PRINTS P-type cation-transporting ATPase superfamily signature 767 778 - -
Lsi09g00270 974 PRINTS P-type cation-transporting ATPase superfamily signature 842 861 - -
Lsi09g00270 974 PRINTS P-type cation-transporting ATPase superfamily signature 474 488 - -
Lsi09g00270 974 PRINTS P-type cation-transporting ATPase superfamily signature 789 799 - -
Lsi09g00270 974 PRINTS P-type cation-transporting ATPase superfamily signature 865 877 - -
Lsi09g00270 974 SFLD p-type atpase 620 894 IPR044492 -
Lsi09g00270 974 SUPERFAMILY HMA, heavy metal-associated domain 34 104 IPR036163 GO:0046872
Lsi09g00270 974 PRINTS H+-transporting ATPase (proton pump) signature 873 898 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi09g00270 974 PRINTS H+-transporting ATPase (proton pump) signature 842 858 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi09g00270 974 ProSiteProfiles Heavy-metal-associated domain profile. 35 101 IPR006121 GO:0046872
Lsi09g00270 974 PANTHER ATP7, ISOFORM B 15 962 - -
Lsi09g00270 974 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 391 924 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi09g00270 974 Gene3D - 722 773 IPR023299 GO:0000166
Lsi09g00270 974 Gene3D - 645 721 IPR023299 GO:0000166
Lsi09g00270 974 CDD HMA 190 256 IPR006121 GO:0046872
Lsi09g00270 974 Gene3D - 188 257 - -
Lsi09g00270 974 SUPERFAMILY HAD-like 637 948 IPR036412 -
Lsi09g00270 974 PANTHER COPPER-TRANSPORTING ATPASE HMA5-RELATED 15 962 - -
Lsi09g00270 974 ProSiteProfiles Heavy-metal-associated domain profile. 188 257 IPR006121 GO:0046872
Lsi09g00270 974 SUPERFAMILY Calcium ATPase, transduction domain A 438 524 IPR008250 -
Lsi09g00270 974 SFLD Haloacid Dehalogenase 620 894 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00038 Lsi-Chr1:431400 Lsi09g00270 Lsi-Chr9:2813136 2.79E-77 dispersed
Lsi01g01690 Lsi-Chr1:15509974 Lsi09g00270 Lsi-Chr9:2813136 0 dispersed
Lsi04g01385 Lsi-Chr4:21656444 Lsi09g00270 Lsi-Chr9:2813136 5.91E-111 dispersed
Lsi09g00270 Lsi-Chr9:2813136 Lsi10g00527 Lsi-Chr10:7523348 0 dispersed
Lsi09g00270 Lsi-Chr9:2813136 Lsi06g01195 Lsi-Chr6:22295824 4.39E-75 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00270 K17686 - csv:101220448 1725.29