Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00272 ATGGAGAATTGTACTTTGATTGGGTTGTTGAAGAAGGCGGCTTTTGAATTTCCTCGCCGCCGGGCTCTCTCTGTCTCCGGAAAGTTCGACATCACACATGAGCGGTTGCAGGAGCTCATCGAACATGCCGCCGCTCGCTTGGTGGATGCCGGAGTTAACGCCGGCGATGTGGTGGCCCTCACCTTCCCTAATACTGTTGAGTATGTGATCATGTTTTTGGCCGTAATCCGATGCCGAGCCACCGCTGCACCATTAAATCCGGCTTACACGGCTGAGGAATTCGAGTTTTACTTATCGGACTCAGAGTCAAAGCTTCTCCTCACATCGAAAGATGGAATTCCATCGGCGCAAACCGCCGCTTCCAAGCTCAATCTTCCTCAAGTAAAAGCGGACCTGTCCAGTGGCGATGAGTTTATTGAACTATTTCCGTCCGCAACTGAAACGAAGTCGAATACTGCGGAGAGTGTTAACGATCCGGCCGACGCGGCACTCTTCCTCCACACCTCCGGCACCACCAGCCGGCCCAAGGGAGTGCCGCTGACTCAACAAAACCTCGCCGCCTCTGTTCAGAACATCAAATCGGTGTACAAGCTTTCGGAGTCCGATTCAACCGTACTCGTTCTTCCGTTGTTCCACGTTCACGGATTAATGGCGGGATTACTATCATCGCTAATTGCCGGAGCCGCCGTGACTCTTCCAGCCGCCGGAAGATTCTCGGCTTCAACGTTTTGGTCCGATATGATCGCCTATAACGCGACGTGGTACACGGCGGTCCCTACGATTCACCAAATCATACTCGAACGCCATTGCAGCAAGCCAGAGCCATCATATCCGAAGCTCCGCTTCATTCGCAGCTGTAGCGCGTCGTTAGCACCTTCGATTTTGGAACGATTGGAAAAATCATTCGGAGCTCCGGTTCTCGAGTCCTACGCAATGACCGAAGCGTCGCATTTAATGGCGTCCAATCCGTTGCCGGAGGACGGCGTACACAAAGCCGGATCGGTAGGGAAACCGATCGGTCAAGAAATGGCTATTCTGGACGAGAACGGCGTTGTGCAATCGGAAGGTGTTAAAGGAGAAGTGTGTATTAGGGGACCAAATGTGACGAAGGGATATAAGAACAATCCAGACGCTAACAAGGCCGCATTCATGTTCGGATGGTTCCACACCGGTGATATCGGCTTCTTCGACTCCGACGGATACTTGCATCTGGTCGGCCGGATCAAGGAACTCATTAACCGAGGAGGTGAGAAAATCTCTCCGATTGAAGTAGACGCCGTGCTTCTATCCCACGCTGACATTGCTCAGGCCGTCGCCTTCGGAGTCCCTGACGAGAAGTACGGAGAAGAGATCAATTGCGCCATTATTCCAAGGGAGGGGAGTTCGATTGACGAAGCGGAAGTGTTACGATTTTGCAAGAAAAACCTTGCGTCCTTCAAGGTTCCAAAGAAGGTGTTCATCACCGATTCTGTTCCAAAAACTGCTACCGGAAAGATCCAACGCCGATTCGTGGCGGAGCATTTTCTTGCCGCTAAAGCTTGA 1542 52.08 MENCTLIGLLKKAAFEFPRRRALSVSGKFDITHERLQELIEHAAARLVDAGVNAGDVVALTFPNTVEYVIMFLAVIRCRATAAPLNPAYTAEEFEFYLSDSESKLLLTSKDGIPSAQTAASKLNLPQVKADLSSGDEFIELFPSATETKSNTAESVNDPADAALFLHTSGTTSRPKGVPLTQQNLAASVQNIKSVYKLSESDSTVLVLPLFHVHGLMAGLLSSLIAGAAVTLPAAGRFSASTFWSDMIAYNATWYTAVPTIHQIILERHCSKPEPSYPKLRFIRSCSASLAPSILERLEKSFGAPVLESYAMTEASHLMASNPLPEDGVHKAGSVGKPIGQEMAILDENGVVQSEGVKGEVCIRGPNVTKGYKNNPDANKAAFMFGWFHTGDIGFFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHADIAQAVAFGVPDEKYGEEINCAIIPREGSSIDEAEVLRFCKKNLASFKVPKKVFITDSVPKTATGKIQRRFVAEHFLAAKA 513
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2852650 2855307 + Lsi09G002720.1 Lsi09g00272 669885

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00272 513 PANTHER ACYL-COA SYNTHETASE 2 510 - -
Lsi09g00272 513 Pfam AMP-binding enzyme C-terminal domain 423 498 IPR025110 -
Lsi09g00272 513 ProSitePatterns Putative AMP-binding domain signature. 165 176 IPR020845 -
Lsi09g00272 513 CDD FACL_fum10p_like 18 506 IPR045310 GO:0016874
Lsi09g00272 513 PANTHER OXALATE--COA LIGASE-LIKE 2 510 - -
Lsi09g00272 513 Pfam AMP-binding enzyme 12 414 IPR000873 -
Lsi09g00272 513 SUPERFAMILY Acetyl-CoA synthetase-like 4 509 - -
Lsi09g00272 513 Gene3D - 5 407 IPR042099 -
Lsi09g00272 513 Gene3D - 408 509 IPR045851 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00272 K22133 AAE3; oxalate---CoA ligase [EC:6.2.1.8] - csv:101220920 927.546
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00678 Lsi-Chr5:9006592 Lsi09g00272 Lsi-Chr9:2852650 2.28E-58 dispersed
Lsi09g00272 Lsi-Chr9:2852650 Lsi09g00465 Lsi-Chr9:4864794 0 dispersed
Lsi10g00966 Lsi-Chr10:14021324 Lsi09g00272 Lsi-Chr9:2852650 5.72E-13 dispersed
Lsi09g00272 Lsi-Chr9:2852650 Lsi06g01133 Lsi-Chr6:21580207 7.67E-53 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g336 . . . . . . . Bma14g00071 . . Cma02g01464 . Car02g01229 . . . Cpe05g00325 . . . . . . . . . . . . . . . . . Cone9ag0773 . Csa05g00293 Chy09g01213 . Blo03g00336 . . . . . . . . Cmo02g01499 . . . . . . . Bhi12g00238 . . Lac11g2107 Hepe06g1557 . Lcy12g1663 Cla01g00275 Cam01g0285 Cec01g0278 Cco01g0291 Clacu01g0284 Cmu01g0271 Cre09g2237 Lsi09g00272 . . Cme09g01750
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002220 2 2 3 3 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 3 3 2 63
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00272 Lsi_Chr09 FPKM 22.361418 23.201832 20.728983 20.027815 17.831898 16.157 18.393127 18.162664 17.551987 18.284721