Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00273 ATGTCAACGCTGCCAGAAAATTATTTGCCATCTTCTACCGGTTGGAGCTTTTTGCAGAACTTCTTTCAACTGTGCTGTGTTCTTGCTGGTAAAATGAATGTGGAGAGTCAAAACAAAAAGAAAGAGTATGCTGCTGATATTTTCTCCATAAAGGAGGCCCGAATGCGGATTCAGCCTTTCATCCATCAAACCCCAGTTTTGTCTTCTGAGACTATTAATGCTGCTTCGGGAAAACAACTTTTCTTCAAATGTGAATGTTTCCAGAAAGGTGGAGCTTTTAAATTCAGAGGTGCCTGCAATGCTATATTGTCACTTGATGAGGACCAGGCTGCTAAAGGGGTTGTGACACATAGCAGTGGCAACCATGCTGCAGCTTTGTCTTTGGCTGCAAAACTGCGAGGAATCCCTGCATATATAGTTATACCAGAAAATGCTCCAAAATGTAAAGTTGAAAATGTGATACGTTATGGTGGTCAGGTTATTTGGAGCAAAGACGCAATACAGTCGAGGGAAACGACTGCCACGAAGGTTATGCAAGAAACTGGTGGTGGTTTGATATCAGGAATTTCAGTGGCTGCAAAAGCCATCAATCCTGCCATCCGGATTTTTGCTGCAGAACCTAAGGGAGCTAATGATGCAGCCATGTCAAAAGCAGCTGGTGAGATAGTAACAGTGGCAGAGACCACCACCATCGCCGATGGTCTTCGAGCTTTTCTCGGCGACCTTACCTGGCCAATAGTAAGAGATTTGGTTGATGATGTAATAACTGTGGAGGACAGTGAGATAGTTGAAGCAATGAGACTTTGTCTTGAAGTGCTGAAAGTTGTTGTGGAACCTAGTGGAGCAATAGGCCTTGCTGCTGTTCTCTCTGATAGTTTCAAGCAAAACCCTTCATGGAAAGATTGCAACTGGATTGGCATTATACTTTCAGGAGGCTCTCAATTTGTTCCTCCTCTTCTTCTTACGGCCATGGAGAGCCCTTCTCCGGCTTCATGCTGGAGCAATATCGTGAAAACTCAACCAGCTCCGAAGCCTCAGCATCAGACTCCGACCTCCTCCGTCCAAGTATTCGCCGATAGCTGCAAGTTCAGTAAAGGCGTTGCTGTTGCCGTTGTTGATGCCAATGCCATTATCCAAGGGGGAGACAAGCTTTCCTCCTCCGCGGATAAGTTTGTTTCAGTTCCTGAGGTTTTGGATGAGATTCGCGATCCCGTGTCTCGCCATAGGCTCGCCTTCGTCCCCTTCACTCTTGAATCCATGGATCCCTCTCCTGACGCTCTCAATAAAGTAATCAAGTTTGCAAGGGCAACTGGTGACTTACAGACGCTTTCAGATGTTGATATTAAACTTATTGCTCTCACTTACACGTTGGAGACTCAGATTCATGGGACCAAACATCTTCGTGAGTGTCCTCCCCCTGTCCACATGGTTAATACAAAGAGGTTACCTGAGAAAGACATGCCTGGGTGGGGCTCTAACGTTCCTAATCTGGAAGAATGGGAAGCATTAGAGCAAGATGCTGATGATCCGTCCAATTCGTCATCAAAGATTCTGCCTTTGCAGGATTTAAACCTGAACATCATCCCTTCAGATGGCCAATCTGAAGATCTTTCGCTAGAGCACAAGGATGAGAGTAACTTGGAGCATCAAGATGAAACTGAGAGTGGTTCAACAAGATCAAGGAGATATCCTCCGAAGAAAAAGGAAATTAATATTGAAGGGAAGAAGATGGTGGCTGATGGAATTGATGCATCTCAGGGACAATATGATGATAATGAGGGTGACTGGACACCTGCTGTCAGTCGAAGCACTCAGAGAAGATATCATAGGAGGAAAGCCAGACGTGAATATTATGAGTCCTTAGCTGAAAAGGATGGTCAACAAGATGTTGAAACCACAGATGGAGACATCCAAGTGGAAACCAATAAATCAGGTCAATCACAGGATAAAATCTCTGAACTGCCAAATACTGGAAATGGAAATGAGGGTAAGATAGAAGAAGGGACAAACAATAATGAAAACCTCTCAGAAATTTTGAAGCAGATGAGGCTGGAAGAAGATTCATTAAATGCCCTTCATGTGGAAGGGCTTGGCACTTCCACAAAAGAAGAATCTGATGAAAGTGAGGTGGAGAATGCTGAGGCTGTTGAGGGCACCTACAATACGGTAAAGGATGAAATGGAACACGTGGAAGATGCAAGTCAGACTAATGAAAGTGTAGACACATCAAATGTAGATGATGTCAGCAGTGATCAGAGTTGGATGCTGAGATCCTTGTCTGAATCAAGTGTAGCTTGTGTTACTGGTGACTTTGCGATGCAGAATGTTCTTCTGCAAATGGGTTTACGATTGTTGGCTCCAGGAGGAATGCAGATCCGGCAACTTCACAGGTGGATTTTGAAATGTCACGCCTGCTACAATGTCACAGCTGAAATTGGAAGGATCTTTTGTCCAAAATGTGGAAATGGTGGAACTTTGCGCAAGGTAGCTGTTACAGTTGGTGAGAATGGAGTTATGTTAGCTGCCCGTAAGCCGAGGATTACTTTGCGAGGCACAAAATTTTCACTTCCTCTACCGCAAGGTGGAAGGGATGCCATCACCAAAAATCTTGTTTTACGCGAAGATCAACTCCCACAAAAGTTTCTACATCCCAAAACCAAGAAGAAAGTCAACAAGCAGGGGGATGATTTCTTTGCTGTGGATGATTTCTTCAGCCACCATAATACTGATAAGAGGGCTCCTTTGCAGCCTCCCGTAAGGCAGGCTTTGGCAGTCTTCAGTGGGAAAAGAAATCCGAATGATAACCATTACTCTCGATCTAAGCCTAAATAG 2832 44.49 MSTLPENYLPSSTGWSFLQNFFQLCCVLAGKMNVESQNKKKEYAADIFSIKEARMRIQPFIHQTPVLSSETINAASGKQLFFKCECFQKGGAFKFRGACNAILSLDEDQAAKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPENAPKCKVENVIRYGGQVIWSKDAIQSRETTATKVMQETGGGLISGISVAAKAINPAIRIFAAEPKGANDAAMSKAAGEIVTVAETTTIADGLRAFLGDLTWPIVRDLVDDVITVEDSEIVEAMRLCLEVLKVVVEPSGAIGLAAVLSDSFKQNPSWKDCNWIGIILSGGSQFVPPLLLTAMESPSPASCWSNIVKTQPAPKPQHQTPTSSVQVFADSCKFSKGVAVAVVDANAIIQGGDKLSSSADKFVSVPEVLDEIRDPVSRHRLAFVPFTLESMDPSPDALNKVIKFARATGDLQTLSDVDIKLIALTYTLETQIHGTKHLRECPPPVHMVNTKRLPEKDMPGWGSNVPNLEEWEALEQDADDPSNSSSKILPLQDLNLNIIPSDGQSEDLSLEHKDESNLEHQDETESGSTRSRRYPPKKKEINIEGKKMVADGIDASQGQYDDNEGDWTPAVSRSTQRRYHRRKARREYYESLAEKDGQQDVETTDGDIQVETNKSGQSQDKISELPNTGNGNEGKIEEGTNNNENLSEILKQMRLEEDSLNALHVEGLGTSTKEESDESEVENAEAVEGTYNTVKDEMEHVEDASQTNESVDTSNVDDVSSDQSWMLRSLSESSVACVTGDFAMQNVLLQMGLRLLAPGGMQIRQLHRWILKCHACYNVTAEIGRIFCPKCGNGGTLRKVAVTVGENGVMLAARKPRITLRGTKFSLPLPQGGRDAITKNLVLREDQLPQKFLHPKTKKKVNKQGDDFFAVDDFFSHHNTDKRAPLQPPVRQALAVFSGKRNPNDNHYSRSKPK 943
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2862906 2873926 + Lsi09G002730.1 Lsi09g00273 669886

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00273 943 SUPERFAMILY NOB1 zinc finger-like 792 855 IPR036283 -
Lsi09g00273 943 MobiDBLite consensus disorder prediction 535 576 - -
Lsi09g00273 943 MobiDBLite consensus disorder prediction 632 671 - -
Lsi09g00273 943 Gene3D - 29 173 IPR036052 -
Lsi09g00273 943 Gene3D - 174 322 IPR036052 -
Lsi09g00273 943 CDD Thr-dehyd 49 312 - -
Lsi09g00273 943 Pfam Nin one binding (NOB1) Zn-ribbon like 792 862 IPR014881 -
Lsi09g00273 943 MobiDBLite consensus disorder prediction 614 631 - -
Lsi09g00273 943 Pfam PIN domain of ribonuclease 371 457 IPR033411 -
Lsi09g00273 943 ProSitePatterns Serine/threonine dehydratases pyridoxal-phosphate attachment site. 85 98 IPR000634 GO:0006520|GO:0030170
Lsi09g00273 943 PANTHER - 325 941 - -
Lsi09g00273 943 CDD PIN_Nob1-like 381 468 IPR033411 -
Lsi09g00273 943 Gene3D - 360 475 - -
Lsi09g00273 943 Coils Coil 665 692 - -
Lsi09g00273 943 PANTHER RNA-BINDING PROTEIN NOB1 325 941 IPR039907 -
Lsi09g00273 943 MobiDBLite consensus disorder prediction 527 671 - -
Lsi09g00273 943 SUPERFAMILY Tryptophan synthase beta subunit-like PLP-dependent enzymes 47 295 IPR036052 -
Lsi09g00273 943 Pfam Pyridoxal-phosphate dependent enzyme 182 289 IPR001926 -
Lsi09g00273 943 Pfam Pyridoxal-phosphate dependent enzyme 58 180 IPR001926 -
Lsi09g00273 943 Gene3D - 786 861 IPR036283 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00273 K11883 NOB1; RNA-binding protein NOB1 - csv:101221544 1131.7
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01273 Lsi-Chr1:11000527 Lsi09g00273 Lsi-Chr9:2862906 7.45E-18 dispersed
Lsi01g01274 Lsi-Chr1:11011153 Lsi09g00273 Lsi-Chr9:2862906 4.35E-16 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g337 . Blo03g00210 Bda06g00086 . . Bpe07g00113 . . . . . . . . . . Cpe05g00324 . . . . . . . . . . . . . . . . . Cone9ag0772 . Csa05g00294 Chy09g01212 . . . . . . . . Bma12g00086 . . . . . . . . . Bhi12g00237 . . . . . . . . . . . . . Lsi09g00273 . . Cme09g01749
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006981 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00273 Lsi_Chr09 FPKM 3.61697 4.751737 1.730891 2.510231 18.883863 19.550457 19.239761 1.289776 1.404375 1.005136