Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00275 ATGAAGTCATGGCTCTTGGAGCTTTCAGGTCAGAAGTATTTGAAGATCCATATCAAGTCTTCTCCAACTGGAACAGCCTTCATCCAGATCCTTGCTTATGGTCTGGCATTTCATGTTCTCCAACTGGAGACCATTAACATTTCATATTCTGCCATAAAAGGATTCCTTTCAGGAGATTTGGGTCAACTCAGCTTCTTGGAGGAACTAATTTTGCATGGAAATAAGCTGCGTGGTCCAGTACCCAAGGAGTTGGGCTACTTAAAGAACCTCAGTATCTTGGACTTAGGGATGAATCAATTCACAGGTCCAATTCCTCCAGAGTTTGGGAATTTAACCAAAATTGTGAAAATAAACCTCCAGTCTAATGAGTTCACTGGTAAGCTGCCTCCTGAGCTGGGAAATTTGAGATTCCTTGAGGAACTAAGGCTGGATAGAAATAAGCTTGGAGGAACTGTTGGCCATTCAGATCATACTGGACTGTACGTGTCAAAAACGAACTTGACTGGGTTCTGTGGCTCATCTCAGCTAAGAGTTGCCGACTTTTCATATAACTTCTTTGTTGGGAGCATACCGAAGTGCTTGGAGCGTCTTCCAGGGTCAAGTTTCCAAGGGAATTGCCTCCATAAAAATAACTCCAAACAACGTCCTTTAGCACAATGCGGTATGACTAAGAGCCATCCAGGAAGCAATGGACGGAACCATCACCTCCATTACCAACCAACATCGAAACCAATCTGGCTTTTGGCCCTTGAGATAGTAACAGGAACTCTGGTGGGTTCTCTCTTCCTTGTTGCTGTTCTAACTGCAGTCCAGAAATTCAATCGAAAATCCTCCATGATATTGCCCTGGAAGAAAGCTGGAAGTAGGAAGTACTACGCTCCAGGAAAAAGCAATATTTTTGCGGTCTTTGGTGCAGATCCTGAGATTTTAAAGGATGTAACGAGATTTAGTCGACAAGAACTTGAACTAGCTTGTGAAGACTTCAGCAACATAATTGGCTCCTCTCGAGACAGTTTGGTATACAAGGGCACCATGAAAACCGGACCCGAGATTGCAGTTATCTCAATGAGCATGAAAGAAGAGCAATGGACAGGATACCTTGAACTCTATTTTCAGACAGAGGTAGCGGATTTGTCACGAATCAACCACGAGAATACGGGAAAATTACTGGGTTATTGCAGAGAGAGTACTCCATTTACAAGGATGCTAGTTTTTGAGTATGCATCAAATGGCACATTATATGAGCATCTACATTATGGAGAAGCATGTCAGTTATCTTGGACGAGACGCATGAAGATTATTTTAGGCATAGCGCGTGGACTCAAGTATCTTCATACAGAACTCCAACCTCCATTCACCATATCTGAGCTGAATTCCAATGCTGTATATCTTACAGATGATTTTTTTCCCAAGCTGATAGACTTTGAAAGTTGGAAGACTATTCTTTCACGTTCGGAAAAGAACTCGGGCTCTATAGGCAGCCAAGGTGCAATATGTGTTCTTCCAAACTCTCTAGAAGCACGACATCTCGACGTGCAAGGTAACATCTACGCATTTGGCGTCCTTCTACTTGAAATAATCAGTGGGAGGCCTCTGTACTGCAAAGACAAAGGAAACTTGGTAGATTGGGCTAAGGACTATATCGAAATGCCAGAAGTGATGTCGTATGTTGTCGATCCCGAACTGAAGCATTTTAGATATGAAGACCTTGAGGTAATATGTGAGGTGGCAAACCTTTGCATCCATCAGCAGCCGACCAAACTGCTATCGATGAAGGAACTGTGCACCATGTTAGAAACTAGAATTGATACCTCTGTTGCCATTGAGTTTAAGGCATCTTCTTTGGCATGGGCAGAACTTGCACTCTCTTAG 1872 43.0 MKSWLLELSGQKYLKIHIKSSPTGTAFIQILAYGLAFHVLQLETINISYSAIKGFLSGDLGQLSFLEELILHGNKLRGPVPKELGYLKNLSILDLGMNQFTGPIPPEFGNLTKIVKINLQSNEFTGKLPPELGNLRFLEELRLDRNKLGGTVGHSDHTGLYVSKTNLTGFCGSSQLRVADFSYNFFVGSIPKCLERLPGSSFQGNCLHKNNSKQRPLAQCGMTKSHPGSNGRNHHLHYQPTSKPIWLLALEIVTGTLVGSLFLVAVLTAVQKFNRKSSMILPWKKAGSRKYYAPGKSNIFAVFGADPEILKDVTRFSRQELELACEDFSNIIGSSRDSLVYKGTMKTGPEIAVISMSMKEEQWTGYLELYFQTEVADLSRINHENTGKLLGYCRESTPFTRMLVFEYASNGTLYEHLHYGEACQLSWTRRMKIILGIARGLKYLHTELQPPFTISELNSNAVYLTDDFFPKLIDFESWKTILSRSEKNSGSIGSQGAICVLPNSLEARHLDVQGNIYAFGVLLLEIISGRPLYCKDKGNLVDWAKDYIEMPEVMSYVVDPELKHFRYEDLEVICEVANLCIHQQPTKLLSMKELCTMLETRIDTSVAIEFKASSLAWAELALS 623
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2875086 2879594 - Lsi09G002750.1 Lsi09g00275 669888

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00275 623 Gene3D Ribonuclease Inhibitor 36 214 IPR032675 -
Lsi09g00275 623 Gene3D Transferase(Phosphotransferase) domain 1 408 613 - -
Lsi09g00275 623 ProSiteProfiles Protein kinase domain profile. 326 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi09g00275 623 Gene3D Phosphorylase Kinase; domain 1 305 407 - -
Lsi09g00275 623 PANTHER PROTEIN MALE DISCOVERER 2 38 623 - -
Lsi09g00275 623 SUPERFAMILY Protein kinase-like (PK-like) 311 599 IPR011009 -
Lsi09g00275 623 Pfam Protein tyrosine and serine/threonine kinase 329 594 IPR001245 GO:0004672|GO:0006468
Lsi09g00275 623 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 38 623 - -
Lsi09g00275 623 SUPERFAMILY L domain-like 37 198 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00275 - - - csv:101221772 1044.65
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00893 Lsi-Chr7:10214514 Lsi09g00275 Lsi-Chr9:2875086 0 dispersed
Lsi09g00275 Lsi-Chr9:2875086 Lsi10g01450 Lsi-Chr10:18578194 3.99E-77 dispersed
Lsi09g00275 Lsi-Chr9:2875086 Lsi05g01804 Lsi-Chr5:25311429 4.96E-10 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g341 . . Bda06g00084 . . Bpe07g00114 . . . Cmo16g01091 Cma02g01466 Cma15g01218 Car02g01230 Car15g01098 . Cpe14g00501 Cpe05g00322 . . . . . . . Cla07g00765 . . . . . . Cone8ag0315 . . Cone9ag0768 . Csa05g00296 Chy09g01210 Cme07g01624 . . . . . . . . . Cmo02g01503 Cmo15g01283 . Cma16g00589 . . . Cpe13g00162 Bhi12g00234 . . . . . . Cla01g00277 . . . . . . Lsi09g00275 Csa04g00601 Chy07g01211 Cme09g01747
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001701 1 3 2 2 2 2 4 2 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 2 2 2 2 3 3 1 70
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83877 PF07714 PK_Tyr_Ser-Thr 5.50E-18 CL0016 Lsi PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00275 Lsi_Chr09 FPKM 13.53528 13.463388 13.004282 11.585629 19.566978 14.79297 22.840185 21.88652 24.143412 20.408783