Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00276 ATGCAGAGATTTCCAATTTCAACTTCAATTTTGCGACCATGCCGGAGACCCATTTGGCAACCGTCTCTTCCAAAACGCTCCGTCACCGTCGCAGTTCCGGCCGCCGCCATCTTCCTCCTCGCCACCCTCTCCGCCGCCGTCCTCATTTCCTCCACTCGCCTCCAATCCACTCTGTTTTCCATTAATTTTCTCGGAAACCAAACAGAAACAATCTCACCAAAAATCCCCAAAAAATCAATCAAATATTACCCACTTAACTGTTCTTCATCTTCCACCACAAACCAAACCCAGAATTTCACCTGCCGGAAAAACTACCCGACCCGATTCGAACCCGAATCAATCGACCCATCGGATCGGCCCGTTTGCTCAGAGTATTTCCGATGGATCCACGAGGATCTGCGGCCGTGGGCGGCGGGCGGAATCACGAGGGAGATGGTGGAGAAAGGGAAGGCGACGGCGCATTTCCGGCTGGCGGTGGTCGGCGGGAGGGTCTACGTGGAGCACTACAAGAAATCAATTCAAACGAGGGATTTGTTTACGATTTGGGGGATTTTGCAGCTTCTGAGAAGGTACCCAGGGCGAATCCCTGATTTGGAGCTGATGTTCGACTGTGATGACCGACCGGTTGTTAAATCGGCCGATTACCGGACTGCGGCCGTGGAGACGGCGGGGCCGCCACCGGTGTTCCGGTACTGCGGCGATGAGGAGACATTGGATATTGTGTTCCCGGATTGGATTGGATTCGAGAGTCTCAACAAGGTTATAAGCAATCGAACTTGGCAAGCCAATGCACCCATAGGGAAAGCAGCAAGTGACTTCATCCAACAAGAGTTAAAGATGGAAAATGTGTATGACTACATGTTTCATCTCCTCAACCAATACGCTAAGCTCCTTCGTTTTCGACCTGAAATCCCGATCGGCGCAGTGGAAATCTGCTCCGAGACGGTGGCTTGCCCGAGAGATGGGATGGAGAAGAAGTTCATGAGAGAATCCATGGTGAAAACTCCCTCTCTCACCATCCCTTGCTCCATGCCACCACCCTTTGACACCCCTTCTCTCCAAAGGCTTTATAGAAGAAATGCCAACCTAATAAGGCAAGTGGAGAAGTGGGAAAATGAATTTTGGAATAAAAATAAACCTTAA 1143 50.66 MQRFPISTSILRPCRRPIWQPSLPKRSVTVAVPAAAIFLLATLSAAVLISSTRLQSTLFSINFLGNQTETISPKIPKKSIKYYPLNCSSSSTTNQTQNFTCRKNYPTRFEPESIDPSDRPVCSEYFRWIHEDLRPWAAGGITREMVEKGKATAHFRLAVVGGRVYVEHYKKSIQTRDLFTIWGILQLLRRYPGRIPDLELMFDCDDRPVVKSADYRTAAVETAGPPPVFRYCGDEETLDIVFPDWIGFESLNKVISNRTWQANAPIGKAASDFIQQELKMENVYDYMFHLLNQYAKLLRFRPEIPIGAVEICSETVACPRDGMEKKFMRESMVKTPSLTIPCSMPPPFDTPSLQRLYRRNANLIRQVEKWENEFWNKNKP 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2891718 2896780 - Lsi09G002760.1 Lsi09g00276 669889

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00276 380 Pfam Glycosyl transferase family 90 262 371 IPR006598 -
Lsi09g00276 380 Pfam Glycosyl transferase family 90 120 246 IPR006598 -
Lsi09g00276 380 PANTHER KDEL LYS-ASP-GLU-LEU CONTAINING - RELATED 258 378 - -
Lsi09g00276 380 PANTHER KDEL LYS-ASP-GLU-LEU CONTAINING - RELATED 29 250 - -
Lsi09g00276 380 Coils Coil 353 373 - -
Lsi09g00276 380 PANTHER O-GLUCOSYLTRANSFERASE RUMI-LIKE PROTEIN (DUF821) 258 378 - -
Lsi09g00276 380 PANTHER O-GLUCOSYLTRANSFERASE RUMI-LIKE PROTEIN (DUF821) 29 250 - -
Lsi09g00276 380 SMART cap10 194 301 IPR006598 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00276 - - - csv:101222002 403.675
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01226 Lsi-Chr5:20146334 Lsi09g00276 Lsi-Chr9:2891718 4.20E-40 wgd
Lsi09g00276 Lsi-Chr9:2891718 Lsi09g01556 Lsi-Chr9:23672488 9.15E-31 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g342 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00297 Chy09g01209 . . . . . . . . . . . . . . . . . . Bhi12g00232 . . Lac11g2111 Hepe06g1560 . Lcy12g1668 Cla01g00278 Cam01g0288 Cec01g0281 Cco01g0294 Clacu01g0287 Cmu01g0274 Cre09g2233 Lsi09g00276 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000256 4 8 4 4 3 4 1 4 5 4 4 4 6 5 5 5 4 11 3 4 5 4 5 6 6 7 5 8 8 9 155
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00276 Lsi_Chr09 FPKM 3.097859 3.828901 1.934299 1.14006 3.294387 2.393517 3.776146 5.493624 4.994621 6.039892