Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00280 ATGTTCAAGTCGGCGAGATGGAGGAGTGAGAAGAATAAGGTTAAGGCGGAATTTAAGTTGCAGTTTTATGTCACTAAGGTGTCACAGTCAGTGGTGGATGCATTGACGTTATCCGTTGTTCCTGGAGATGTGGGAAAGCCAACTGCAAGACTGGATAAAGTTACAGTTCGTGATGGAAGTTGCAAATGGGAAACTCCAGTTTATCAAACAGTCAAGTTCTTGCGGGACACAAAATCTGGGAAAATCAATGAGAAAATCTATTACTTCCTCGTCTCGATGGGACGAGCAAAATCCAGGGTGTTTGGGGAGGTTTCTATCAACTTAGCTGATTATGCCGATGCCACAAAATCTTCTTCTGTTTCTCTTCCCCTAAAGAATTCAAATTCTGATGCGGTTTTGCATGTTTTGATACAGAAGCTGCAGTCTAAAATTGAGCCAAGAGAGGTGGAAGATTTTGACAATGTCAGTGTTAGATCCCAGGAAACGAACTTGAAATCATATTTGAGCAATGGTGAAATAGATGAGAGCACTACAAACAATTGCACTGAAGATGCGCAGATTAGCAAGAGCCCTCATGATTTTGAACTAAATGGTGACTGTAGAGAATCAAGTGGATCTGATATTACATTGTCAAGTTCTGAGAGCAGCTCTGGACTTGATACTCCACGAGAACATAGAGCGAGAAACAATAACCATCTTCAACTTGTTACTTTATCATCAGTTCCTCACAAACCAGAGACATTCCTTTCAACATCCACTAATAAGGAGAATCAGAGATCAAAATCAATGTGGTCCCTTGGTTCCGATCATGGAGTAAGCATAGATGAATCGTCAGATAATATGCTTCCTGTAGAAAGGTCTGGACCAGTTTCGACGTCTGAAAGAGTTGCAGACATTGAGATTGGAAAGCTCAAGGCTGAGCTAGTTGGCTTTTCCAGGCAGGCAGAAGTTTCAGAATTGGAACTACAGACACTTCGAAAGCAAATTGTCAAAGAGAGTAAAAGGGGTCAGGATTTGTCAAAAGAAATTGTCATTTTGAAAGAGGAGAGAGATTCACTCAGGGTGGAATGCGAGAAACTCAAAGCCAAATCAAAAAACAACATGGACTTGGAGGATAAGAAAATGGAGGCTCTTCTTGAAGAAATGAAGGAAGAACTAAACCAAGAAAAGGAACTAAATATCAATCTTCGACTACAACTCCAGAAGACCCAGAAATCTAATGATGAGTTGATTCTTGCAATGCGAGACCTTGAGGAAATGTTAGAGCAAAAAAATGGCGACAGAGTCCGTCTCTATGACAGATCAAGATTTTCTGAGAATACTGAAGAGTTCTATAATTCCATCTCGAAGTGTGAATCTGAGGATGATGAGGAGCAGAAGGCATTGGAAAAGCTTGTTAAGCAGCATAGTAATGCAAATGGAACATTTCTTCTGGAACAAAAGGTTATTGACCTATATAGTGAAGTAGAATTCTACAAGAGAGAAAAGGATGAATTAGAAATGCATATGGAACAACTAGCACTTGACTATGAAATACTGAGACAAGAAAATCATGGCATGTCATATAAACTGGAGCAATGTGAACTGCAGGAGAAACTTGACATGAAAGAAGAATGCACACTCTCAGCTACCACAGTAGAGCTGGAAACACACATAGAACATTTGGATAGGGAACTTAAGCAGCGGTCAAAAGACTTCTCTGATTCTTTGAGCACCATAAAAGAACTTGAAACCAATATCCAGGCCTTGGAGGAAGAACTGGAGCAGCAAGCTGAAAAGTTCGTAGCTGATCTAGAAGATATGACACGTGCCAAAATTGAGCAGGAGCAAAGAGCCATCCTAGCAGAGGAGGACTTGAGAAAGACAAGGTGGAGAAATGCTAATACAGCTGAGAGGCTTAAAGAAGAACTCAAGCGGCTTTCAATGCAAATAGCCTCGACGTTTAATGCAAATGAGAAGGTAGCTGCTAAAGCAGTGGCAGAATCTATCGAGCTGCAACTGCAGAAAATTCAATTAGATGAAAAACTTGCGTCTACTAATAAAGAGCTTCAATCAGTTAAGAGGGAGCATGAGGCTAAGCTCTGTGAGCTCACAAATGTGGTAGATTTGCAAACAAGTCAGATCGAACAGATGTTCTTAGAACTTCATACAAAATCCAAGCTGCTTGATCAACAGGAAATTCAAAAAGAAGTTTGTGAATCTCTCTCTCGGGAGATTTTGTTGCTCAAGTATGAAGTTGAAAGGCTCACAACAGAGAATAGGTTTCTCCAGGAAAGTGAGATCTTGATTCAGAACAAAAACATGGAAATAAATGACCTGGTAACAACCATTGCTTTGATTATGAAAGAAGGCGAGAAGATTCGAAACGAGTTAAATAGAATAAGGCAGAGGAAGGATGAACATGAGATATCGATGGGATGTCTACAAACAGAGTTGGAGGTGCTGAGAGATCACTACAGTGACTTAAAACATTCTTTGGTTGAAGGGGAGATAGAGAAAGATAAACTCAGACATCAGGTCTTTCAGCTAAATGATGACTTGAGGAAGGTAAAAGAATTCAATGGTGCTGACATGCTCTGGTATAGCGAGGAACATACATCAGCCTTTGATGGAATTGAAGCTATTACGGAAAGTAATAAGTCCACTCCTTCTGAAAGTAGCCCAAAGGAAGTCGCAGCTCTAAGGGAGAAAATTGAGTTGCTTGAGGTATTCTCTAGATCCCTACTTACATTAAAGAGGAATTTAAATCTGAAGATGCAGTGTCAAAATGAAGAATCTCATGGTAGATTTATTTTTCAATCATGTTATTCACTTTATGGATCTCACTTTTCTTTCCAGAGACAAATAAGTTTGAAAGAAGACGCCATAGAAACTCTAGCTAGTAGAATTTCAGAAAAGGCGATGGATTTTCAGCACACAATTGAAGAGCTAGAGAGCAAATTGGAAGAAGTTCCTACTAGCCCATTCCAAGAGGTAGGAAATATGCATTATTTTAAGGCATCAGATTCAAATCTCTATAGTTGTGTCAAAAGGAATGTAAATATCCGTCCAAGCAATGTCGAAAGGACCAGTGATGCACCCAAGGATACAGCGGTGAACCAAGGCCAAAACACAAATTCTTCATCACCTGTAGAATATGGGCGTGCAGCGTCAGTTGGGAGGAATGACAGAATTTCAGCAGAGACAGAACAGAAAGCCTGCAAACTTGACGACAGTGACAACAATTGTGACAAATTTTCGACAGAATTAGCATTATTGAGGGAAAGAAACAAATTAATGGAGAGTGAACTAAAGGAAATGCAAGAAAGATATTCAGAGATAAGTCTCAAGTTCGCAGAAGTAGAAGGTGAAAGACAACAGCTTGTAATGACTCTACGCAGTCTTAAAAATTACAAGAAGATTTAG 3405 39.79 MFKSARWRSEKNKVKAEFKLQFYVTKVSQSVVDALTLSVVPGDVGKPTARLDKVTVRDGSCKWETPVYQTVKFLRDTKSGKINEKIYYFLVSMGRAKSRVFGEVSINLADYADATKSSSVSLPLKNSNSDAVLHVLIQKLQSKIEPREVEDFDNVSVRSQETNLKSYLSNGEIDESTTNNCTEDAQISKSPHDFELNGDCRESSGSDITLSSSESSSGLDTPREHRARNNNHLQLVTLSSVPHKPETFLSTSTNKENQRSKSMWSLGSDHGVSIDESSDNMLPVERSGPVSTSERVADIEIGKLKAELVGFSRQAEVSELELQTLRKQIVKESKRGQDLSKEIVILKEERDSLRVECEKLKAKSKNNMDLEDKKMEALLEEMKEELNQEKELNINLRLQLQKTQKSNDELILAMRDLEEMLEQKNGDRVRLYDRSRFSENTEEFYNSISKCESEDDEEQKALEKLVKQHSNANGTFLLEQKVIDLYSEVEFYKREKDELEMHMEQLALDYEILRQENHGMSYKLEQCELQEKLDMKEECTLSATTVELETHIEHLDRELKQRSKDFSDSLSTIKELETNIQALEEELEQQAEKFVADLEDMTRAKIEQEQRAILAEEDLRKTRWRNANTAERLKEELKRLSMQIASTFNANEKVAAKAVAESIELQLQKIQLDEKLASTNKELQSVKREHEAKLCELTNVVDLQTSQIEQMFLELHTKSKLLDQQEIQKEVCESLSREILLLKYEVERLTTENRFLQESEILIQNKNMEINDLVTTIALIMKEGEKIRNELNRIRQRKDEHEISMGCLQTELEVLRDHYSDLKHSLVEGEIEKDKLRHQVFQLNDDLRKVKEFNGADMLWYSEEHTSAFDGIEAITESNKSTPSESSPKEVAALREKIELLEVFSRSLLTLKRNLNLKMQCQNEESHGRFIFQSCYSLYGSHFSFQRQISLKEDAIETLASRISEKAMDFQHTIEELESKLEEVPTSPFQEVGNMHYFKASDSNLYSCVKRNVNIRPSNVERTSDAPKDTAVNQGQNTNSSSPVEYGRAASVGRNDRISAETEQKACKLDDSDNNCDKFSTELALLRERNKLMESELKEMQERYSEISLKFAEVEGERQQLVMTLRSLKNYKKI 1134
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2924748 2931687 - Lsi09G002800.1 Lsi09g00280 669893

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00280 1134 PANTHER MYOSIN HEAVY CHAIN-RELATED PROTEIN 1 902 - -
Lsi09g00280 1134 PANTHER MYOSIN HEAVY CHAIN-RELATED PROTEIN 944 1133 - -
Lsi09g00280 1134 Coils Coil 669 689 - -
Lsi09g00280 1134 Coils Coil 784 804 - -
Lsi09g00280 1134 MobiDBLite consensus disorder prediction 1018 1046 - -
Lsi09g00280 1134 MobiDBLite consensus disorder prediction 202 218 - -
Lsi09g00280 1134 MobiDBLite consensus disorder prediction 231 265 - -
Lsi09g00280 1134 MobiDBLite consensus disorder prediction 166 265 - -
Lsi09g00280 1134 Coils Coil 732 752 - -
Lsi09g00280 1134 PANTHER MYOSIN HEAVY CHAIN-RELATED PROTEIN 1 902 - -
Lsi09g00280 1134 PANTHER MYOSIN HEAVY CHAIN-RELATED PROTEIN 944 1133 - -
Lsi09g00280 1134 Coils Coil 315 434 - -
Lsi09g00280 1134 Pfam N-terminal C2 in EEIG1 and EHBP1 proteins 11 141 IPR019448 -
Lsi09g00280 1134 Coils Coil 630 650 - -
Lsi09g00280 1134 Coils Coil 489 516 - -
Lsi09g00280 1134 Coils Coil 566 618 - -
Lsi09g00280 1134 Coils Coil 960 980 - -
Lsi09g00280 1134 MobiDBLite consensus disorder prediction 166 187 - -
Lsi09g00280 1134 MobiDBLite consensus disorder prediction 1018 1058 - -
Lsi09g00280 1134 Coils Coil 1069 1117 - -
Lsi09g00280 1134 ProSiteProfiles C2 NT-type domain profile. 6 141 IPR019448 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00280 - - - cmo:103482728 1791.55
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00896 Lsi-Chr7:10233174 Lsi09g00280 Lsi-Chr9:2924748 0 dispersed
Lsi09g00280 Lsi-Chr9:2924748 Lsi09g00950 Lsi-Chr9:12280493 8.23E-08 dispersed
Lsi09g00280 Lsi-Chr9:2924748 Lsi03g01968 Lsi-Chr3:31099943 8.46E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g345 Blo02g01105 Blo03g00203 Bda06g00083 . Bpe05g00637 Bpe07g00115 . Bma14g00613 . Cmo16g00637 Cma02g01064 Cma15g01215 Car02g00807 Car15g01096 . Cpe14g00498 Cpe05g00319 . . . . . . . Cla07g00764 Cam07g0819 Cec07g0878 Cco07g0854 Clacu07g0797 Cmu07g0804 Cre07g1159 Cone8ag0317 Cone12ag0316 . Cone9ag0766 . Csa05g00299 Chy09g01206 . . . . . . . Bma05g00813 Bma12g00090 . Cmo02g01506 Cmo15g01279 Cma06g00414 Cma16g00588 . . . Cpe13g00164 Bhi12g00228 . . . . . . Cla01g00281 Cam01g0291 Cec01g0284 Cco01g0297 Clacu01g0290 Cmu01g0277 Cre09g2230 Lsi09g00280 . . Cme09g01743
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001416 2 3 2 2 2 2 3 2 2 2 2 2 4 2 2 3 2 4 3 2 2 2 2 2 2 2 2 5 4 1 72
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00280 Lsi_Chr09 FPKM 2.247674 2.290869 3.938173 4.402867 11.14057 10.563059 11.491298 2.158043 2.19179 2.759904