Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00282 ATGGCCGCCGACGACTCTGAAGCTGATCAACCACCGCCTCAAAACGACGTCGCTCCCCATAACTCCTTCATTTCTCTTCCTCACAATATTGCGTTGGCTCGGGTCGAATGGGAGAAGAAGATGGCATTGATCAAAGCATGGGAGGAGAGTGAAAAGATCAAAGCAGAGAATAAGGCATACAAAAGGCTTTCTTCTGTTGAATCTTGGGAGAATACCAGAAAAGCCTCCATAGAAGCACAACTGATGAAGATAGAGGAAAAAATGGAGAAGAAGAAAGCGGAGTATGCTGAGCAAATGAAGAACAAAATCGTTGGAATTCACAAGGAGGGCGAAGAGAAGAAAGCAACCATTGAGGCAGAGCGAAAAGAACAGTTCCTCAAGGTCGAGGAAACCGCAGCAAAATATCGGACTTCGGGGTTCATCCCAAAGACCCTACTCAAATGCTTCAGTGGTTGA 456 46.05 MAADDSEADQPPPQNDVAPHNSFISLPHNIALARVEWEKKMALIKAWEESEKIKAENKAYKRLSSVESWENTRKASIEAQLMKIEEKMEKKKAEYAEQMKNKIVGIHKEGEEKKATIEAERKEQFLKVEETAAKYRTSGFIPKTLLKCFSG 151
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2961531 2966816 + Lsi09G002820.1 Lsi09g00282 669895

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00282 151 PANTHER REMORIN 1.4 28 150 - -
Lsi09g00282 151 MobiDBLite consensus disorder prediction 1 22 - -
Lsi09g00282 151 Coils Coil 74 101 - -
Lsi09g00282 151 PANTHER OS02G0117200 PROTEIN 28 150 - -
Lsi09g00282 151 Pfam Remorin, C-terminal region 39 143 IPR005516 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00282 - - - cmo:103482726 244.588
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g02030 Lsi-Chr5:27291946 Lsi09g00282 Lsi-Chr9:2961531 9.22E-39 dispersed
Lsi09g00282 Lsi-Chr9:2961531 Lsi01g00117 Lsi-Chr1:1233076 1.06E-08 dispersed
Lsi05g01228 Lsi-Chr5:20162204 Lsi09g00282 Lsi-Chr9:2961531 3.98E-35 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g347 . . . . . . . . Cmo06g01081 . Cma02g01472 . Car02g01233 . . . Cpe05g00657 . . . . . . . . . . . . . . . Cone12ag0317 . Cone9ag0765 . . Chy09g01204 . . . . . . Bpe11g00655 . . . Cmo02g01507 . Cma06g01060 . Car06g00892 . Cpe08g00557 . Bhi12g00226 . . . . . . Cla01g00283 Cam01g0293 Cec01g0286 Cco01g0299 Clacu01g0292 Cmu01g0278 Cre09g2229 Lsi09g00282 . . Cme09g01741
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000535 3 7 5 4 4 3 4 3 2 3 3 3 4 3 3 4 3 7 3 3 2 3 3 3 3 3 3 6 4 3 107
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00282 Lsi_Chr09 FPKM 91.038361 85.958298 230.887344 227.235748 7.087083 6.490143 5.902545 488.808441 471.966339 433.581726