Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00285 ATGGACGGTCGCGCTCTAACGGCCTCCTCCTTCTTCACTCCCATTGATTTATTGCGACCCAGAAGAGGAGCTGTTAGAAATATGTGTTTTAATGGCAGACCCAGTAAGTTTTCGGTTCTTGCTTCCAAAGAAGAGGCTGAACTCGACCGTTGGGACCAAATGGAGCTCAAGTTTGGCCGCTTGATTGGGGAAGACCCCAAATTAACATTGGCCAAGATAATGAGCAAAAAAATGAATCCAGATGCTTCTTATCTTGAAGTTGAGAAATCATTTTACCAGAAGAAGGGTAAGTCTAACGAGGTAGAGGAACTTTCTCTTGATGGTTTGAATTTGGTCAGACCTCAGTTAAAGAAGGAAATTAAGTTAAAAGCTGCCAATAAGCCACCTGCACCAGATTTAAAGAAACCAAGCCAATCAGTTGGAAAGGTAGCAGTTAGTCCTAAAGGTAGGGTTCCCAATGTTATTTTGAGAAAACCAACGATTTATAATGAGGACGATGTTGAAGATAAGCCATCGCGGATAAGGATGAAGCCGAATTTATCATTGAAAATGAGCAATGTATCGACAAAGGAGCAATATAGTGATATGACACTGTTGAGGAAGCCTGAACCAATGACTTCAAATGAAGTTATTGATGAGAAGGAAAAGCTCTCTGGTGATGGGTATGTTGATATTGTTGAGAATATTGAAAATGGGGCTAGTAAGGGATCAACAAGTGACAAAGTTGATGATTTTACTCTTTCTAAGAAGCCAGAAATAGGAGGTGACAAAACAAGACTTGAAAATGAAAATGATCACAAAAATCTGGCTTATTCAGAAAGTGATACGGTTGATGGTAAAGAGAAGAATGACATTGAAGACTTATACATCCTAAAAAAGCCTTTAAATGTGATGTCTGGCATGTCTAAAGAAACTGAACTAGGCTCATCAACAAATGAAGACAGGAAAGATATTGATTATTCTCCTATAGGATTGCAGCTACATGAGCCAAGTGATATAGATTATGATGATAACCCAGCAGCTTTGAGCGAATCATTCAGTGATATTTTGGATTCAACAATAGAGGTGTCCAACAAAGCTACATTATTGGGTAAACCAAGAAGAGTAGATCATTCTTCTAAGGAAGCACTAAAACTCAGTAGAGAAGAGGCCTCCACCCCTGAAACGGACGTCAATGGTGCCGTTGAGACAGAGTTCTTCTCTGCTATCCCTGCTTTGGAGGAACACGAACTTGCTGACTGGACTAAAGCAGAGGATCTGGCAAAGTCAGGAGACAGAGCTGACGTGGAAGTAATAAGCTCGAGTACTCGAGGTTTTGTTGTATCATTCGGCTCCCTAATAGGATTTATTCCATATCGTAATCTTGCTGCCAAGTGGAAGTTCTTAGCTTTTGAGTCATGGTTAAGACAGAAAGGTTTGGATCCATCAATATACAAGCAAAACTTAGGAACTATTGGAAGTAGTGATGGTGGAAGCCAGGCCTTTGCCAGTACTAGGCCGGATCCGGAAATTGATGTAAAAGATGGAGGAGAACTTACACCTGATATGAAACTGGAGGATCTTCTTCAAATTTATGATCGAGAGAAAATCAAATTCTTGTCATCATTTGTTGGCCAGGCGACGCTGCAAGTAGGTGATGTTGTCAAATGCTGCATTAAGAAGATTGCTTATTTTGGTATCTTTGTTGAGATCGAAGGAGTGCCTGCTTTGATTCATCAGACAGAGGTTTCCTGGGACGCTACTTTAAACCCTGCATCATACTTTAAAATTGGTCAGGTTGTAGAGGCCAAAGTTCATCAGTTGGATTTTTCACTCGAACGCATATTCTTATCGTTGAAGCAGATTACACCAGACCCGCTAGCTGAAGCATTGGAGTCTGTGGTTGGTGATCATGATCCCATGGATGGAAGATTAGATTCAGCCAAAGTAGATACCCAGTGGGCTGATGTCGAATCTCTCATCAAGGAACTGCAAAATACTGAAGGTATTGAGGCTGTATCCAAAGGGCGTTTTTTCCTTAGCCCTGGCTTGGCTCCAACCTTTCAGGTATATATGGCTTCTATGTATGAAAATCAGTACAAATTACTTGCTCGATCTGGAAACAAAGTACAAGAGCTGATGGTTGAGACATCTTTGGATAAAGAAACAATGAAATCAGTTATCTTAACTTGCACCAACAGGGTAGAGTAG 2190 40.78 MDGRALTASSFFTPIDLLRPRRGAVRNMCFNGRPSKFSVLASKEEAELDRWDQMELKFGRLIGEDPKLTLAKIMSKKMNPDASYLEVEKSFYQKKGKSNEVEELSLDGLNLVRPQLKKEIKLKAANKPPAPDLKKPSQSVGKVAVSPKGRVPNVILRKPTIYNEDDVEDKPSRIRMKPNLSLKMSNVSTKEQYSDMTLLRKPEPMTSNEVIDEKEKLSGDGYVDIVENIENGASKGSTSDKVDDFTLSKKPEIGGDKTRLENENDHKNLAYSESDTVDGKEKNDIEDLYILKKPLNVMSGMSKETELGSSTNEDRKDIDYSPIGLQLHEPSDIDYDDNPAALSESFSDILDSTIEVSNKATLLGKPRRVDHSSKEALKLSREEASTPETDVNGAVETEFFSAIPALEEHELADWTKAEDLAKSGDRADVEVISSSTRGFVVSFGSLIGFIPYRNLAAKWKFLAFESWLRQKGLDPSIYKQNLGTIGSSDGGSQAFASTRPDPEIDVKDGGELTPDMKLEDLLQIYDREKIKFLSSFVGQATLQVGDVVKCCIKKIAYFGIFVEIEGVPALIHQTEVSWDATLNPASYFKIGQVVEAKVHQLDFSLERIFLSLKQITPDPLAEALESVVGDHDPMDGRLDSAKVDTQWADVESLIKELQNTEGIEAVSKGRFFLSPGLAPTFQVYMASMYENQYKLLARSGNKVQELMVETSLDKETMKSVILTCTNRVE 729
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2974533 2981378 - Lsi09G002850.1 Lsi09g00285 669898

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00285 729 MobiDBLite consensus disorder prediction 242 260 - -
Lsi09g00285 729 SMART S1_6 543 613 IPR022967 -
Lsi09g00285 729 Pfam S1 RNA binding domain 542 613 IPR003029 GO:0003676
Lsi09g00285 729 ProSiteProfiles S1 domain profile. 545 613 IPR003029 GO:0003676
Lsi09g00285 729 PANTHER NUCLEIC ACID-BINDING, OB-FOLD-LIKE PROTEIN 20 539 - -
Lsi09g00285 729 PANTHER NUCLEIC ACID-BINDING, OB-FOLD-LIKE PROTEIN 540 729 - -
Lsi09g00285 729 MobiDBLite consensus disorder prediction 234 260 - -
Lsi09g00285 729 SUPERFAMILY Nucleic acid-binding proteins 532 636 IPR012340 -
Lsi09g00285 729 Gene3D - 540 622 IPR012340 -
Lsi09g00285 729 MobiDBLite consensus disorder prediction 489 510 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00285 - - - csv:101217667 1280.39
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00029 Lsi-Chr7:334623 Lsi09g00285 Lsi-Chr9:2974533 4.64E-12 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g361 . . . . . . . . . . . . Car02g01235 . . . Cpe05g00315 . . . . . . . . . . . . . . . Cone12ag0318 . . . Csa05g00302 Chy09g01202 . . . . . . . . . . Cmo02g01509 . . . . . . . Bhi12g00221 . . Lac11g2118 Hepe06g1567 . Lcy12g1675 . . . . . . . Lsi09g00285 . . Cme09g01739
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010174 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00285 Lsi_Chr09 FPKM 3.148406 2.826095 1.796023 1.457978 0.533859 0.0 0.0 0.0 0.0 0.0