Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00294 ATGGGTATCTCTAATATTTGTTTTCTCTTCCTTCTTTCTCTTCTTTCTTTCTATTCCCAAACCCATGCAGCTACTTTTCAAGTCCGCAACAACTGCCCCTTCACTGTCTGGGCCGCCGCGGTACCCGGTGGCGGACGACAACTAAATCGGAACGATGTTTGGACATTTAACGTGAATCCTGGCACGACTGCCGCTCGTATTTGGGCTCGAACTAACTGCAATTTCGACGGTTCGGGCCGTGGTAGATGTCAGACTGGCGATTGTGGTGGCCTCCTCCAGTGTCAAGCTTACGGCACTCCGCCGAACACCCTCGCCGAATATGCATTGAACCAATTCAATAACTTGGACTTCTTCGATATCTCTCTCATCGATGGGTTTAACGTTCCGATGGAGTTCAGCCCAACGTCAGGCGGGTGCACTCGTGGCATCAGGTGCACTGCAGACATCAACGGACAGTGCCCGAACGAGCTTAGGGCTCCTGGAGGGTGCAACAACCCGTGCACCGTGTTCGGTGGCGATCAATACTGCTGCACCGCCCCGAACAGCAACTGCGGGCCGACGTTTTACTCTAGGTTCTTCAAGGATCGGTGTCCAGATGCATACAGTTATCCAAAAGATGATGCAACCAGCACATTCACTTGCCCGGGAGGAACCAACTATAGAGTCGTCTTCTGCCCTTAA 681 52.28 MGISNICFLFLLSLLSFYSQTHAATFQVRNNCPFTVWAAAVPGGGRQLNRNDVWTFNVNPGTTAARIWARTNCNFDGSGRGRCQTGDCGGLLQCQAYGTPPNTLAEYALNQFNNLDFFDISLIDGFNVPMEFSPTSGGCTRGIRCTADINGQCPNELRAPGGCNNPCTVFGGDQYCCTAPNSNCGPTFYSRFFKDRCPDAYSYPKDDATSTFTCPGGTNYRVVFCP 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3040586 3041751 - Lsi09G002940.1 Lsi09g00294 669907

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00294 226 SMART tha2 26 226 IPR001938 -
Lsi09g00294 226 PRINTS Pathogenesis-related protein signature 79 108 IPR001938 -
Lsi09g00294 226 PRINTS Pathogenesis-related protein signature 216 225 IPR001938 -
Lsi09g00294 226 PRINTS Pathogenesis-related protein signature 116 132 IPR001938 -
Lsi09g00294 226 PRINTS Pathogenesis-related protein signature 66 77 IPR001938 -
Lsi09g00294 226 PRINTS Pathogenesis-related protein signature 25 37 IPR001938 -
Lsi09g00294 226 PRINTS Pathogenesis-related protein signature 44 53 IPR001938 -
Lsi09g00294 226 PANTHER OS03G0233200 PROTEIN 9 226 IPR001938 -
Lsi09g00294 226 Pfam Thaumatin family 30 226 IPR001938 -
Lsi09g00294 226 SUPERFAMILY Osmotin, thaumatin-like protein 23 226 IPR037176 -
Lsi09g00294 226 ProSitePatterns Thaumatin family signature. 79 94 IPR017949 -
Lsi09g00294 226 PIRSF PR5 1 226 IPR001938 -
Lsi09g00294 226 CDD TLP-P 26 226 - -
Lsi09g00294 226 Gene3D Thaumatin 23 226 IPR037176 -
Lsi09g00294 226 ProSiteProfiles Thaumatin family profile. 23 226 IPR001938 -
Lsi09g00294 226 PANTHER THAUMATIN-LIKE PROTEIN 9 226 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00294 - - - csv:101202921 449.899
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g01373 Lsi-Chr7:19983160 Lsi09g00294 Lsi-Chr9:3040586 3.29E-96 dispersed
Lsi07g01374 Lsi-Chr7:19994991 Lsi09g00294 Lsi-Chr9:3040586 1.49E-105 dispersed
Lsi09g00294 Lsi-Chr9:3040586 Lsi07g01100 Lsi-Chr7:16405759 5.94E-55 dispersed
Lsi09g00292 Lsi-Chr9:3032278 Lsi09g00294 Lsi-Chr9:3040586 5.29E-81 proximal
Lsi09g00294 Lsi-Chr9:3040586 Lsi09g00295 Lsi-Chr9:3048392 3.09E-96 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g388 . . . . . . . . . . . Cma15g01207 . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00314 . . . . . . . Bpe11g00682 . . . . Cmo15g01272 . . . . . Cpe13g00169 . . . . . . . Cla01g00291 Cam01g0302 Cec01g0294 Cco01g0309 Clacu01g0302 Cmu01g0287 Cre09g2220 Lsi09g00294 . . Cme09g01729
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000769 1 3 0 2 2 1 3 4 2 3 2 2 6 4 3 7 2 3 2 3 3 4 5 2 6 4 5 3 2 3 92
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00294 Lsi_Chr09 FPKM 9.634086 9.309678 31.725662 31.784357 55.429722 60.33828 53.432289 51.128304 49.943047 49.631176