Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00295 ATGACTATTACCATTTGGATCTCTTCAATTCTCCATAGAGAAACAAAATCTAATACCTTTCTCTTTTTTCTTTCTCTTCTTTCTTTCTCTTCCCAAACCCATGCAGCTACTTTTGAAGTCCGCAACAACTGCCCCTTCACTGTTTGGGCTGCCGCAGTACCCGGCGGCGGTCAACAACTTAATCAGAACGATGTTTGGACATTTGATGTGAATCCCGGCACGGTTGCCGCACGTGTTTGGGCTCGAACTAACTGCAACTTCGACGATTCAGGTCGTGGGGGATGTCAGACTGGCGACTGTGGTGGTATCCTTCAATGCCAAGCTTACGGCAGTCCACCGAACACCCTTGCCGAATACGCATTGAACCAATTCAATAACTTGGACTTCTTCGATATCTCTCTCGTTGATGGGTTTAACGTTCCGATGGACAGCTGTGGGCCGACGGATTACTCTAAGTTCTTCAAGGATCGGTGCCCAGATGCATACAGTTACCCAAAAGACGATGCAACTAGCACATTCACTTGCCCCGGAGGAACCAACTACAGGGTCGTCTTCTGCCCTTAG 564 48.23 MTITIWISSILHRETKSNTFLFFLSLLSFSSQTHAATFEVRNNCPFTVWAAAVPGGGQQLNQNDVWTFDVNPGTVAARVWARTNCNFDDSGRGGCQTGDCGGILQCQAYGSPPNTLAEYALNQFNNLDFFDISLVDGFNVPMDSCGPTDYSKFFKDRCPDAYSYPKDDATSTFTCPGGTNYRVVFCP 187
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3048392 3052274 - Lsi09G002950.1 Lsi09g00295 669908

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00295 187 PRINTS Pathogenesis-related protein signature 56 65 IPR001938 -
Lsi09g00295 187 PRINTS Pathogenesis-related protein signature 128 144 IPR001938 -
Lsi09g00295 187 PRINTS Pathogenesis-related protein signature 177 186 IPR001938 -
Lsi09g00295 187 PRINTS Pathogenesis-related protein signature 91 120 IPR001938 -
Lsi09g00295 187 PRINTS Pathogenesis-related protein signature 78 89 IPR001938 -
Lsi09g00295 187 PRINTS Pathogenesis-related protein signature 37 49 IPR001938 -
Lsi09g00295 187 Pfam Thaumatin family 42 143 IPR001938 -
Lsi09g00295 187 PIRSF PR5 2 144 IPR001938 -
Lsi09g00295 187 PIRSF PR5 142 187 IPR001938 -
Lsi09g00295 187 Gene3D Thaumatin 35 143 IPR037176 -
Lsi09g00295 187 Gene3D Thaumatin 144 187 IPR037176 -
Lsi09g00295 187 PANTHER THAUMATIN-LIKE PROTEIN 144 187 - -
Lsi09g00295 187 PANTHER THAUMATIN-LIKE PROTEIN 18 143 - -
Lsi09g00295 187 SUPERFAMILY Osmotin, thaumatin-like protein 35 187 IPR037176 -
Lsi09g00295 187 ProSitePatterns Thaumatin family signature. 91 106 IPR017949 -
Lsi09g00295 187 CDD TLP-P 38 187 - -
Lsi09g00295 187 PANTHER OS03G0233200 PROTEIN 144 187 IPR001938 -
Lsi09g00295 187 ProSiteProfiles Thaumatin family profile. 35 187 IPR001938 -
Lsi09g00295 187 SMART tha2 38 187 IPR001938 -
Lsi09g00295 187 PANTHER OS03G0233200 PROTEIN 18 143 IPR001938 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00295 - - - csv:101218149 306.605
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g00295 Lsi-Chr9:3048392 Lsi07g01373 Lsi-Chr7:19983160 3.02E-65 dispersed
Lsi09g00294 Lsi-Chr9:3040586 Lsi09g00295 Lsi-Chr9:3048392 3.09E-96 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g392 . . . . . . . . . . . Cma15g01205 . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00315 . . . . . . . . . . . . Cmo15g01271 . . . . . . . . . . . . . . . . . . . . Lsi09g00295 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000769 1 3 0 2 2 1 3 4 2 3 2 2 6 4 3 7 2 3 2 3 3 4 5 2 6 4 5 3 2 3 92
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00295 Lsi_Chr09 FPKM 0.447743 0.61081 1.268307 1.317117 0.744513 0.66463 0.578531 0.895286 1.317061 1.248248