Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00296 ATGTTATACGGTACCATGAGAGATCTCAAAGCGGTGAAGAGCACGCGCGATTTCAGCGCTTCTTTGAATCGTTTCTGTAAAATGGGGAGCTTAGAACGCACGATTCTCGTCACTGGTGGGGCTGGATTCATTGGCAGCCACACTGTTGTTCAGCTTCTTAAAGAAGGGTTTAGGGTTTCCATTATCGATAATCTTGATAATTCGGTTATTGAAGCTGTTGATCGGGTTAGGGAATTGGTCGGCCCTAAACTTTCACAGAAACTTGAGTTTAATTTGGGAGATCTGAGAAAGAAAGAGGACATAGAGAATTTGTTTTCTAAGACGAGATTTGATGCTGTTATCCATTTTTCTGGTCTTAAAGCTGTTGGGGAGAGTGTTGCTTTCCCACGTAGATATTTCGATAATAATCTTGTTGGAACCATCAATCTCTATGAGGTTATGGCAAAATATGATTGCAAGAAGATGGTTTTCTCGTCCTCTGCAACTGTTTATGGCCAGCCTGAGAAAATTCCATGTGTTGAGGATTTTGAATTAGTGGCATTGAATCCTTACGGTCGGACAAAGCTTTTCTTGGAAGAGATTGCTCGAGACATTCAAAAAGCAGAGCCCGGTTGGGGAATCATTTTGTTGAGATACTTCAACCCTGTTGGGGCTCATGAGAGTGGTAAAATTGGTGAAGATCCAAAGGGTATCCCTAACAATCTCATGCCTTACATCCAGCAAGTCGCAGCCGGTAGACTACCGGAGCTCAATGTATATGGTCATGACTATCCAACAAAAGACGGCAGCGCTGTCCGAGACTATATCCATGTTATGGACTTAGCTGATGGCCACATTGCTGCTCTTCGAAAACTTTTTACGAATGAAGATATAGGTAACCATTTTCCTTCAACGAACTATCAAGATAGTTTGAGAAATTCCTGTTTAAGAACTTCAGTTAACCGACATCTGACATATTCTGCTGTAGGGTGCACTGCCTACAACTTGGGGACTGGACAGGGCACATCTGTGCTAGAAATGGTTGCAGCCTTCGAGAAGGCCTCGGGCAAGAAAATTCCTACGAAACTATGCCCAAGGAGGCCCGGTGATGCAACGGCAGTGTATGCGTCGACAGAGAAAGCCAAGGAAGAACTCGGTTGGACGTACGGACCAATGGAAGTGGGCAAGCAGCAATCCATGGGGCTACCAGAAGAAACCTTAAAAATGGCGGAGGTCATTCTCAGGCGCGGCGGTGTTCTTTACTCCTCCGATTCCGATACCAGATTCTCCCTGAGATTAAGACGAGAGTTGTTGAAAATCGGAGATCCTTGCGGTTCAGATCTGGGGGAAGAGGCGATGACGCCGTCGCCGGCGGAAACGATCGGCGATTCTGGAACAGGAGATTCTCAGAGATCTATACCGACGCCATTTCTTACGAAAACTTATCAACTGGTTGATGATCCGGCTGTGGACGATCTCATCTCGTGGAATGAAGATGGATCTACCTTCATAGTTTGGCGACCGGCTGAATTTGCTCGAGATTTACTTCCTAAATACTTTAAACACAATAATTTCTCTAGTTTCGTCCGTCAACTCAACACTTACGGATTCCGAAAGGTTGTGCCGGACCGATGGGAATTTGCGAATGATTGCTTCCGGAGAGGCGAGAAAGGACTTCTCCGAGACATTCAGCGGCGGAAAGTAGCGCTGTCGGTAACAACAACGTCGCCGGCGTCGCCAGCTGCGGTGGCTGTGCCTGTGACGGTGGTGGCGTCTCCAGCAGTGTTGGCTCACGTGATATCGCCGGCGAACTCTGCGGAAGAGCAGGTTACATCCTCGAACTCATCGCCAATGGCATTTCAGCGAAGTACGAGCTGCACCACGACGCCGGAACTTGTGAGAGAGAATGAGCGGTTAAGGAAGGAGAATATGCAACTGAGTCACGAGTTGACTCAGTTGAAAGGACTCTGTAACAACATACTATCGTTGATGACGAATTACGCTTCAGGTCACCATCACCAGTTGGAGTCGGTGAGCGTCCGAGACGGGAAGGCACTGGAGCTCTTACCGGCGAGGCAGGTGATGGAAGACGAAGGCGCCGTCAGCGACGGGGCTCATGAGGTGAGACTGAAGATGGAGGAGACCATGACAGCGGCCGCGGCGGCGGTAGGAATGACGCCGAAACTGTTCGGAGTATCGATCGGAGTGAAGCGGATGAGGAGAGATGAAGAAGACGAAGAAGAAGAGATGGTGGGGCAGAATCATGTACAGTCGGAAGAAGGTGAGACCGGGTCAGAGATCAAAGCTGAACCGTTGGATGAAAACTCTGAAAATCCAGAGGGATCCGCGTCGCCGTGGCTTGAACTCGGAAATCAAGGCTCCTGA 2364 48.48 MLYGTMRDLKAVKSTRDFSASLNRFCKMGSLERTILVTGGAGFIGSHTVVQLLKEGFRVSIIDNLDNSVIEAVDRVRELVGPKLSQKLEFNLGDLRKKEDIENLFSKTRFDAVIHFSGLKAVGESVAFPRRYFDNNLVGTINLYEVMAKYDCKKMVFSSSATVYGQPEKIPCVEDFELVALNPYGRTKLFLEEIARDIQKAEPGWGIILLRYFNPVGAHESGKIGEDPKGIPNNLMPYIQQVAAGRLPELNVYGHDYPTKDGSAVRDYIHVMDLADGHIAALRKLFTNEDIGNHFPSTNYQDSLRNSCLRTSVNRHLTYSAVGCTAYNLGTGQGTSVLEMVAAFEKASGKKIPTKLCPRRPGDATAVYASTEKAKEELGWTYGPMEVGKQQSMGLPEETLKMAEVILRRGGVLYSSDSDTRFSLRLRRELLKIGDPCGSDLGEEAMTPSPAETIGDSGTGDSQRSIPTPFLTKTYQLVDDPAVDDLISWNEDGSTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFANDCFRRGEKGLLRDIQRRKVALSVTTTSPASPAAVAVPVTVVASPAVLAHVISPANSAEEQVTSSNSSPMAFQRSTSCTTTPELVRENERLRKENMQLSHELTQLKGLCNNILSLMTNYASGHHHQLESVSVRDGKALELLPARQVMEDEGAVSDGAHEVRLKMEETMTAAAAAVGMTPKLFGVSIGVKRMRRDEEDEEEEMVGQNHVQSEEGETGSEIKAEPLDENSENPEGSASPWLELGNQGS 787
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3057340 3064775 + Lsi09G002960.1 Lsi09g00296 669909

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00296 787 MobiDBLite consensus disorder prediction 439 463 - -
Lsi09g00296 787 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 32 382 IPR036291 -
Lsi09g00296 787 PRINTS Heat shock factor (HSF) domain signature 470 493 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lsi09g00296 787 PRINTS Heat shock factor (HSF) domain signature 508 520 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lsi09g00296 787 PRINTS Heat shock factor (HSF) domain signature 521 533 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lsi09g00296 787 MobiDBLite consensus disorder prediction 770 787 - -
Lsi09g00296 787 Gene3D - 35 330 - -
Lsi09g00296 787 MobiDBLite consensus disorder prediction 600 621 - -
Lsi09g00296 787 Coils Coil 629 649 - -
Lsi09g00296 787 Pfam GDP-mannose 4,6 dehydratase 36 381 IPR016040 -
Lsi09g00296 787 MobiDBLite consensus disorder prediction 733 787 - -
Lsi09g00296 787 SMART hsfneu3 466 559 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lsi09g00296 787 PANTHER UDP-GLUCOSE 4-EPIMERASE 29 391 - -
Lsi09g00296 787 Pfam HSF-type DNA-binding 470 559 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lsi09g00296 787 Gene3D - 462 560 IPR036388 -
Lsi09g00296 787 MobiDBLite consensus disorder prediction 733 768 - -
Lsi09g00296 787 CDD UDP_G4E_1_SDR_e 34 381 IPR005886 GO:0003978|GO:0006012
Lsi09g00296 787 TIGRFAM galE: UDP-glucose 4-epimerase GalE 35 289 IPR005886 GO:0003978|GO:0006012
Lsi09g00296 787 ProSitePatterns HSF-type DNA-binding domain signature. 509 533 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lsi09g00296 787 SUPERFAMILY Winged helix DNA-binding domain 467 559 IPR036390 -
Lsi09g00296 787 Gene3D - 217 381 - -
Lsi09g00296 787 PANTHER BIFUNCTIONAL UDP-GLUCOSE 4-EPIMERASE AND UDP-XYLOSE 4-EPIMERASE 1 29 391 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00296 K01784 galE, GALE; UDP-glucose 4-epimerase [EC:5.1.3.2] - csv:101203400 614.379
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g01481 Lsi-Chr8:22967222 Lsi09g00296 Lsi-Chr9:3057340 2.12E-48 dispersed
Lsi01g00978 Lsi-Chr1:8045231 Lsi09g00296 Lsi-Chr9:3057340 1.41E-61 transposed
Lsi02g01000 Lsi-Chr2:10134146 Lsi09g00296 Lsi-Chr9:3057340 1.00E-58 transposed
Lsi03g01558 Lsi-Chr3:26547120 Lsi09g00296 Lsi-Chr9:3057340 3.49E-47 transposed
Lsi04g01426 Lsi-Chr4:22001482 Lsi09g00296 Lsi-Chr9:3057340 1.49E-06 transposed
Lsi07g00724 Lsi-Chr7:7849503 Lsi09g00296 Lsi-Chr9:3057340 7.19E-130 transposed
Lsi07g01339 Lsi-Chr7:19572709 Lsi09g00296 Lsi-Chr9:3057340 3.42E-18 transposed
Lsi09g00157 Lsi-Chr9:1617883 Lsi09g00296 Lsi-Chr9:3057340 2.18E-145 transposed
Lsi05g01244 Lsi-Chr5:20250709 Lsi09g00296 Lsi-Chr9:3057340 2.06E-69 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi05g01637 . 37 237 HSF AT4G17750 59.6 1.9e-61 233.8
Lsi05g00963 . 40 243 HSF AT4G17750 54.8 5.2e-59 225.7
Lsi08g01589 . 44 244 HSF AT4G17750 50.9 9.5e-53 204.9
Lsi11g00182 . 65 248 HSF AT4G17750 51.7 4.6e-47 186.0
Lsi02g00833 CCT,ECH 13 192 HSF AT4G17750 50.8 8.1e-44 175.3
Lsi04g01548 CCT 20 118 HSF AT4G17750 69.7 2.3e-38 157.1
Lsi01g00978 . 5 177 HSF AT4G17750 51.4 3.0e-38 156.8
Lsi09g00296 . 438 560 HSF AT4G17750 60.2 8.6e-38 155.2
Lsi05g00963 . 41 247 HSF AT5G16820 56.1 1.2e-60 231.1
Lsi05g01637 . 9 242 HSF AT5G16820 53.5 6.0e-60 228.8
Lsi02g02257 . 46 269 HSF AT5G16820 52.6 3.1e-56 216.5
Lsi11g00182 . 67 248 HSF AT5G16820 51.1 2.1e-44 177.2
Lsi06g00879 CCT 10 176 HSF AT5G16820 51.6 5.6e-42 169.1
Lsi07g01178 . 45 547 HSF AT1G32330 53.1 6.1e-121 431.4
Lsi05g01637 . 26 227 HSF AT1G32330 54.0 1.0e-59 228.0
Lsi05g00963 . 11 227 HSF AT1G32330 51.5 1.3e-59 227.6
Lsi02g02257 . 34 254 HSF AT1G32330 50.9 3.6e-57 219.5
Lsi10g01556 . 8 112 HSF AT1G32330 70.5 1.4e-40 164.5
Lsi05g00963 . 41 263 HSF AT3G02990 53.5 4.3e-63 239.2
Lsi05g01637 . 38 241 HSF AT3G02990 56.7 4.4e-60 229.2
Lsi02g02257 . 46 269 HSF AT3G02990 52.4 2.4e-58 223.4
Lsi06g00879 CCT 10 172 HSF AT3G02990 50.3 3.5e-41 166.4
Lsi05g01637 . 9 237 HSF AT2G26150 56.2 4.3e-68 255.4
Lsi02g02257 . 34 254 HSF AT2G26150 54.5 2.4e-63 239.6
Lsi07g01178 . 40 275 HSF AT2G26150 56.1 1.7e-61 233.4
Lsi05g01637 . 26 218 HSF AT5G43840 54.4 1.5e-55 213.4
Lsi05g00963 . 29 349 HSF AT3G22830 52.0 2.3e-89 326.2
Lsi07g01178 . 61 274 HSF AT3G22830 58.9 8.3e-63 238.0
Lsi08g01589 . 33 255 HSF AT3G22830 50.2 9.5e-59 224.6
Lsi11g00182 . 55 253 HSF AT3G22830 50.7 1.7e-52 203.8
Lsi05g00963 . 26 323 HSF AT3G51910 52.3 8.0e-70 260.8
Lsi02g02257 . 33 346 HSF AT3G51910 50.2 2.3e-69 259.2
Lsi08g01589 . 33 225 HSF AT3G51910 52.8 1.2e-49 193.7
Lsi08g01589 . 33 232 HSF AT3G63350 50.5 7.6e-47 184.5
Lsi10g01556 . 5 144 HSF AT3G63350 53.8 9.3e-37 151.0
Lsi11g00182 . 60 252 HSF AT5G54070 53.6 1.3e-50 197.2
Lsi01g00978 . 2 296 HSF AT4G36990 52.3 1.3e-70 263.5
Lsi09g00296 . 461 783 HSF AT4G11660 50.6 1.2e-79 293.9
Lsi01g00978 . 2 108 HSF AT4G11660 71.0 1.5e-42 170.6
Lsi08g01481 CCT 16 114 HSF AT4G11660 64.2 1.1e-37 154.5
Lsi06g00597 . 27 120 HSF AT4G11660 69.1 3.3e-37 152.9
Lsi07g01178 . 65 158 HSF AT4G11660 69.1 1.6e-36 150.6
Lsi01g01902 . 7 209 HSF AT2G41690 54.7 9.2e-49 190.7
Lsi03g01558 . 43 243 HSF AT2G41690 55.5 4.3e-46 181.8
Lsi08g01481 CCT 9 367 HSF AT1G46264 50.8 3.1e-82 302.4
Lsi06g00597 . 19 202 HSF AT1G46264 53.8 1.8e-50 196.8
Lsi01g00978 . 4 198 HSF AT1G46264 51.2 2.9e-48 189.5
Lsi07g01178 . 65 170 HSF AT1G46264 73.6 3.4e-41 166.0
Lsi03g01558 . 41 137 HSF AT1G46264 71.1 1.4e-37 154.1
Lsi10g01556 . 5 105 HSF AT1G46264 67.3 5.1e-37 152.1
Lsi05g01637 . 29 141 HSF AT1G46264 60.2 1.1e-36 151.0
Lsi11g00263 CCT 10 181 HSF AT3G24520 64.5 2.0e-62 236.5
Lsi05g01637 . 37 237 HSF AT4G17750 59.6 1.9e-61 233.8
Lsi05g00963 . 40 243 HSF AT4G17750 54.8 5.2e-59 225.7
Lsi08g01589 . 44 244 HSF AT4G17750 50.9 9.5e-53 204.9
Lsi11g00182 . 65 248 HSF AT4G17750 51.7 4.6e-47 186.0
Lsi02g00833 CCT,ECH 13 192 HSF AT4G17750 50.8 8.1e-44 175.3
Lsi04g01548 CCT 20 118 HSF AT4G17750 69.7 2.3e-38 157.1
Lsi01g00978 . 5 177 HSF AT4G17750 51.4 3.0e-38 156.8
Lsi09g00296 . 438 560 HSF AT4G17750 60.2 8.6e-38 155.2
Lsi05g00963 . 41 247 HSF AT5G16820 56.1 1.2e-60 231.1
Lsi05g01637 . 9 242 HSF AT5G16820 53.5 6.0e-60 228.8
Lsi02g02257 . 46 269 HSF AT5G16820 52.6 3.1e-56 216.5
Lsi11g00182 . 67 248 HSF AT5G16820 51.1 2.1e-44 177.2
Lsi06g00879 CCT 10 176 HSF AT5G16820 51.6 5.6e-42 169.1
Lsi07g01178 . 45 547 HSF AT1G32330 53.1 6.1e-121 431.4
Lsi05g01637 . 26 227 HSF AT1G32330 54.0 1.0e-59 228.0
Lsi05g00963 . 11 227 HSF AT1G32330 51.5 1.3e-59 227.6
Lsi02g02257 . 34 254 HSF AT1G32330 50.9 3.6e-57 219.5
Lsi10g01556 . 8 112 HSF AT1G32330 70.5 1.4e-40 164.5
Lsi05g00963 . 41 263 HSF AT3G02990 53.5 4.3e-63 239.2
Lsi05g01637 . 38 241 HSF AT3G02990 56.7 4.4e-60 229.2
Lsi02g02257 . 46 269 HSF AT3G02990 52.4 2.4e-58 223.4
Lsi06g00879 CCT 10 172 HSF AT3G02990 50.3 3.5e-41 166.4
Lsi05g01637 . 9 237 HSF AT2G26150 56.2 4.3e-68 255.4
Lsi02g02257 . 34 254 HSF AT2G26150 54.5 2.4e-63 239.6
Lsi07g01178 . 40 275 HSF AT2G26150 56.1 1.7e-61 233.4
Lsi05g01637 . 26 218 HSF AT5G43840 54.4 1.5e-55 213.4
Lsi05g00963 . 29 349 HSF AT3G22830 52.0 2.3e-89 326.2
Lsi07g01178 . 61 274 HSF AT3G22830 58.9 8.3e-63 238.0
Lsi08g01589 . 33 255 HSF AT3G22830 50.2 9.5e-59 224.6
Lsi11g00182 . 55 253 HSF AT3G22830 50.7 1.7e-52 203.8
Lsi05g00963 . 26 323 HSF AT3G51910 52.3 8.0e-70 260.8
Lsi02g02257 . 33 346 HSF AT3G51910 50.2 2.3e-69 259.2
Lsi08g01589 . 33 225 HSF AT3G51910 52.8 1.2e-49 193.7
Lsi08g01589 . 33 232 HSF AT3G63350 50.5 7.6e-47 184.5
Lsi10g01556 . 5 144 HSF AT3G63350 53.8 9.3e-37 151.0
Lsi11g00182 . 60 252 HSF AT5G54070 53.6 1.3e-50 197.2
Lsi01g00978 . 2 296 HSF AT4G36990 52.3 1.3e-70 263.5
Lsi09g00296 . 461 783 HSF AT4G11660 50.6 1.2e-79 293.9
Lsi01g00978 . 2 108 HSF AT4G11660 71.0 1.5e-42 170.6
Lsi08g01481 CCT 16 114 HSF AT4G11660 64.2 1.1e-37 154.5
Lsi06g00597 . 27 120 HSF AT4G11660 69.1 3.3e-37 152.9
Lsi07g01178 . 65 158 HSF AT4G11660 69.1 1.6e-36 150.6
Lsi01g01902 . 7 209 HSF AT2G41690 54.7 9.2e-49 190.7
Lsi03g01558 . 43 243 HSF AT2G41690 55.5 4.3e-46 181.8
Lsi08g01481 CCT 9 367 HSF AT1G46264 50.8 3.1e-82 302.4
Lsi06g00597 . 19 202 HSF AT1G46264 53.8 1.8e-50 196.8
Lsi01g00978 . 4 198 HSF AT1G46264 51.2 2.9e-48 189.5
Lsi07g01178 . 65 170 HSF AT1G46264 73.6 3.4e-41 166.0
Lsi03g01558 . 41 137 HSF AT1G46264 71.1 1.4e-37 154.1
Lsi10g01556 . 5 105 HSF AT1G46264 67.3 5.1e-37 152.1
Lsi05g01637 . 29 141 HSF AT1G46264 60.2 1.1e-36 151.0
Lsi11g00263 CCT 10 181 HSF AT3G24520 64.5 2.0e-62 236.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004116 2 2 2 0 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 2 2 44
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25866 PF16363 GDP_Man_Dehyd 4.90E-58 CL0063 Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00296 Lsi_Chr09 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.561536