Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00305 ATGTCTGGCTCTGATTCTGCTTCTGCTTCTGCTTCTGCTTCTGTACTTTCTGACCAACAAAACATTCCGACACTTAAAACCCCTTTGATCTCCCAAACCCCAACAGAAGAAACAGAGTCAAAATTTCCATATCGCTCTCATATTCTTACAGAGTCCAAATGTATAGCCGACATCGCACTTCCGATGATTCTTGTCGGCTTTTTGATGTACTCTCGTTCGATGATTTCCATGTTGTTTCTTGGCCGCTTAGGTGCTTTGTCCTTGGCTGGTGGTTCACTTGCTATTGGCTTTGCTAATATCACTGGCTACTCTGTTCTCTCTGGTCTTGCTATTGGCATGGAACCCATTTGTGGTCAAGCTTTTGGAGCTAAAAAATTCAAACTTTTAGGCCTTGCCCTTCAAAGAACTATCATTCTTCTACTCATTTCTTCATTACCCATTTCGTTTTTATGGTTTAATATGAAGAAAATCCTTCTCTTTTGTGGCCAAGATGATGATATTGCCAATGAAGCTCATTCCTATATCCTCTGTTCTATCCCTGATTTAATTGCTCTGTCTTTTCTTCACCCTTTACGAATTTACCTTCGTAGTCAATCCATTAATCTCCCTCTCACATACTGTGCTATATTAGCCATTCTATTTCACATCCCAATTAATTACCTTTTCGTCTCTGTCTTCGAATGGGGAATTCGCGGTGTCGCTTTAGGAGCCGTCTGGACTAATTTCAACCTCGTCGGATCATTGGTTGTCTTCATCTTAATCTCCGGCGTCTACAAGAAAACCTGGCCGGGAATTTCGTCGGATTGTTTGAAAGAATGGAAATCGCTTCTTGGGTTAGCGATCCCAAGCTGTATTTCTGTTTGTTTAGAATGGTGGTGGTATGAAATCATGATTTTATTAAGTGGGTTCATGATTAATCCTCAATCCACAGTGGCTTCAATGGGGATTTTGATTCAAACTACTGCTTTAATCTACATTTTCCCATCATCCTTAAGCTTTGGAGTATCAACAAGAGTAGGAAATCAATTGGGTGCAAATCATCCAAACAGAGCAAAATTAGCCGCCATTGTTGGGCTCTGTACAAGCTTCTTCCTAGGAATTTCAGCGTTGGTTTTCGCTTTCAATATCCGGAAAGTATGGGCGAGAATGTTCACAGATGACATAGAAATCATCGAATTAACATCTGTAATTCTCCCAATCATCGGACTCTGTGAACTAGGAAACTGTCCACAGACGACAAGTTGTGGGGTATTAAGAGGAACAGCCAGGCCAAAATTGGGAGCGAATATAAATTTGGGATGTTTTTACATGGTGGGAATGCCGGTGGCGATATGGCTGAGCTTTTACGCCGGCTGGGACTTTAAAGGACTGTGGATTGGGCTGTTGGCGGCTCAGGGGTCATGTGCAATGACGATGCTGATGGTTCTGACTCGAACCAATTGGGAAGAACAAGCTGAGAGAGCTAAGGAACTGACTAGAAATGGCACGGAGGAGATTGAAAATGGGGATGAAGAAGAAAATGGGGAATTTCAGGAAGAAGAAGAAGAAGAAGGAGGAGGAGGAGGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATGATGATGATGAAATAAAAGAGTGTTTTAATTCAATGAATGGAAGACATTTGTTAGTGTGA 1674 41.58 MSGSDSASASASASVLSDQQNIPTLKTPLISQTPTEETESKFPYRSHILTESKCIADIALPMILVGFLMYSRSMISMLFLGRLGALSLAGGSLAIGFANITGYSVLSGLAIGMEPICGQAFGAKKFKLLGLALQRTIILLLISSLPISFLWFNMKKILLFCGQDDDIANEAHSYILCSIPDLIALSFLHPLRIYLRSQSINLPLTYCAILAILFHIPINYLFVSVFEWGIRGVALGAVWTNFNLVGSLVVFILISGVYKKTWPGISSDCLKEWKSLLGLAIPSCISVCLEWWWYEIMILLSGFMINPQSTVASMGILIQTTALIYIFPSSLSFGVSTRVGNQLGANHPNRAKLAAIVGLCTSFFLGISALVFAFNIRKVWARMFTDDIEIIELTSVILPIIGLCELGNCPQTTSCGVLRGTARPKLGANINLGCFYMVGMPVAIWLSFYAGWDFKGLWIGLLAAQGSCAMTMLMVLTRTNWEEQAERAKELTRNGTEEIENGDEEENGEFQEEEEEEGGGGGEEEEEEEEEEEEEEEDDDDEIKECFNSMNGRHLLV 557
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3118896 3120569 - Lsi09G003050.1 Lsi09g00305 669918

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00305 557 PANTHER MULTIDRUG RESISTANCE PROTEIN 41 499 - -
Lsi09g00305 557 Coils Coil 522 542 - -
Lsi09g00305 557 CDD MATE_eukaryotic 51 487 IPR045069 GO:0042910|GO:1990961
Lsi09g00305 557 TIGRFAM matE: MATE efflux family protein 61 458 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lsi09g00305 557 MobiDBLite consensus disorder prediction 499 544 - -
Lsi09g00305 557 Pfam MatE 61 221 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lsi09g00305 557 Pfam MatE 282 444 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lsi09g00305 557 PANTHER PROTEIN DETOXIFICATION 49 41 499 - -
Lsi09g00305 557 MobiDBLite consensus disorder prediction 486 557 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00305 K03327 TC.MATE, SLC47A, norM, mdtK, dinF; multidrug resistance protein, MATE family - csv:101219094 854.744
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01262 Lsi-Chr5:20393240 Lsi09g00305 Lsi-Chr9:3118896 0 dispersed
Lsi06g00222 Lsi-Chr6:2553189 Lsi09g00305 Lsi-Chr9:3118896 0 dispersed
Lsi08g01051 Lsi-Chr8:19131850 Lsi09g00305 Lsi-Chr9:3118896 0 dispersed
Lsi09g00305 Lsi-Chr9:3118896 Lsi11g00220 Lsi-Chr11:2253868 1.91E-180 dispersed
Lsi09g00304 Lsi-Chr9:3117744 Lsi09g00305 Lsi-Chr9:3118896 4.29E-177 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g400 . . . . . . . . . . Cma02g01482 Cma15g01199 Car02g01242 Car15g01086 . . Cpe05g00307 . . . . . . . . . . . . . . Cone8ag0330 . Cone6ag0749 Cone9ag0752 . Csa05g00322 . . Blo03g00373 . . . . Bpe11g00685 . . . Cmo02g01521 Cmo15g01264 . . . . . Cpe13g00176 Bhi12g00205 . . Lac11g2136 Hepe06g1582 . Lcy12g1700 Cla01g00299 Cam01g0311 Cec01g0302 Cco01g0318 Clacu01g0311 Cmu01g0296 Cre09g2212 Lsi09g00305 . . Cme09g01720
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001123 3 2 4 5 4 2 4 2 2 1 2 2 2 2 2 4 2 7 4 2 2 2 2 1 2 2 2 4 2 2 79
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00305 Lsi_Chr09 FPKM 3.31828 7.220246 4.083054 2.325534 0.195138 0.0 0.37312 0.0 0.0 0.027104