Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00309 ATGGCTTCTTCTTCACCTAAGAAGCATTCTTCGTATAGAGGAATCCGATGCCGGAGCGGCAAATGGGTGTCGGAGATTCGCGAGCCACGTAAGACAACGCGTATATGGCTCGGCACGTTTCCAACCGCCGAGATGGCTGCCGCCGCTTACGATGTTGCTGCCCTTGCCCTCCGAGGCGGCGATGCTATTCTTAACTTCCCTGCCTCCATTCCCACTTACCCCGTTCCTGCGTCGACTTCTCCGGTTGACATTCGCTCTGCTGCTTCCACTGCTGCCGCTAATGCATCGAAGAAAGCTGCATCGTCGACTTCCCGGGTCGAGGTTAGCACTAAGGAAGATAGTAGCAATATGATGATGGGGATGGAGGAATTTGTGGATGAAGAAGAGATTTTTGGGATGCCGGGTTTGTTGGCGGACATGGCGGAGGGGATGATGGTGTCGCCGCCGAGAATGAACTCGCCGCCGCTGTCCGATGACTCGATGGAAAATTCTGATGGAACGGAAAGTTTATGGAGCTACTTTTAA 525 53.52 MASSSPKKHSSYRGIRCRSGKWVSEIREPRKTTRIWLGTFPTAEMAAAAYDVAALALRGGDAILNFPASIPTYPVPASTSPVDIRSAASTAAANASKKAASSTSRVEVSTKEDSSNMMMGMEEFVDEEEIFGMPGLLADMAEGMMVSPPRMNSPPLSDDSMENSDGTESLWSYF 174
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3150495 3151019 + Lsi09G003090.1 Lsi09g00309 669922
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00309 174 MobiDBLite consensus disorder prediction 95 114 - -
Lsi09g00309 174 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 1 174 - -
Lsi09g00309 174 SUPERFAMILY DNA-binding domain 10 69 IPR016177 GO:0003677
Lsi09g00309 174 Gene3D AP2/ERF domain 11 69 IPR036955 GO:0003700|GO:0006355
Lsi09g00309 174 Pfam AP2 domain 11 59 IPR001471 GO:0003700|GO:0006355
Lsi09g00309 174 SMART rav1_2 11 73 IPR001471 GO:0003700|GO:0006355
Lsi09g00309 174 MobiDBLite consensus disorder prediction 148 174 - -
Lsi09g00309 174 PANTHER ETHYLENE RESPONSE FACTOR 1 174 - -
Lsi09g00309 174 CDD AP2 10 69 IPR001471 GO:0003700|GO:0006355
Lsi09g00309 174 MobiDBLite consensus disorder prediction 153 174 - -
Lsi09g00309 174 ProSiteProfiles AP2/ERF domain profile. 11 67 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g00309 Lsi-Chr9:3150495 Lsi09g00596 Lsi-Chr9:6458757 6.39E-41 dispersed
Lsi09g00309 Lsi-Chr9:3150495 Lsi09g00310 Lsi-Chr9:3187047 1.27E-35 tandem
Lsi07g01412 Lsi-Chr7:20629204 Lsi09g00309 Lsi-Chr9:3150495 5.00E-56 transposed
Lsi05g01266 Lsi-Chr5:20431416 Lsi09g00309 Lsi-Chr9:3150495 7.23E-34 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25867 PF00847 AP2 3.10E-11 CL0081 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00309 - - csv:101204373 270.396