Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi09g00310 | ATGGATTGGTTCGCTCAATTTTCTGATCCTCTTCCTTATTATGCTAATTGTAATTACAAATCGGAATCCTCTTCCACGCTTTCAGACGCCGGAACGCCTCCTCAGACCGTGGCTAACTCCGACGAAGAAGTGATTCTGGCGTCCAACCGCCCAAAGCGACGGGCCGGTCGCCGGATTTTTAAAGAAACCAGGCATCCGGTTTACAGAGGAGTACGTCGGAGGAATAACGACAAATGGGTTTGTGAGGTGAGGGAGCCGAATAAGAAGACGAGGATTTGGCTCGGCACCTACCCAACAGCGGAGATGGCGGCCCGTGCACACGATATAGCGGCACTCGCGTTGAGAGGGAAGTCGGCTTGTCTCAATTTCGCTGACTCTGCTTGGCGATTCCCTATTCCGGCAAGTGATGACCCGTCTGTGATCAGGGCGGCAGCGGCGAGGGCGGCGAATGAGTGTAAGGATGAGGAATGTAATGTGAGTCGGGAAGAGGACGACGGTGTTTCTGGTCAGCCGACGGCGGACCCTGAACGACCGGTTTATATCGACGATGAGGCTCTGTCGAATATGCCGATGTTGCTTGCCAGCTTGGCGGAAGGACTTCTTCTCTCTCCTCCATCTTTTTGTGTCAATGATGACGTGGAGTGGGATGATGTGGCAATGAGTGATGATGTGTCATTGTGGAGCTTTTAG | 690 | 52.9 | MDWFAQFSDPLPYYANCNYKSESSSTLSDAGTPPQTVANSDEEVILASNRPKRRAGRRIFKETRHPVYRGVRRRNNDKWVCEVREPNKKTRIWLGTYPTAEMAARAHDIAALALRGKSACLNFADSAWRFPIPASDDPSVIRAAAARAANECKDEECNVSREEDDGVSGQPTADPERPVYIDDEALSNMPMLLASLAEGLLLSPPSFCVNDDVEWDDVAMSDDVSLWSF | 229 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 3187047 | 3187736 | + | Lsi09G003100.1 | Lsi09g00310 | 669923 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi09g00310 | 229 | PRINTS | Ethylene responsive element binding protein signature | 90 | 106 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi09g00310 | 229 | PRINTS | Ethylene responsive element binding protein signature | 68 | 79 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi09g00310 | 229 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1F | 1 | 229 | - | - | |
Lsi09g00310 | 229 | SUPERFAMILY | DNA-binding domain | 67 | 126 | IPR016177 | GO:0003677 | |
Lsi09g00310 | 229 | MobiDBLite | consensus disorder prediction | 155 | 178 | - | - | |
Lsi09g00310 | 229 | CDD | AP2 | 68 | 126 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi09g00310 | 229 | Pfam | AP2 domain | 66 | 116 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi09g00310 | 229 | Gene3D | AP2/ERF domain | 67 | 125 | IPR036955 | GO:0003700|GO:0006355 | |
Lsi09g00310 | 229 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D | 1 | 229 | IPR045277 | GO:0003700 | |
Lsi09g00310 | 229 | SMART | rav1_2 | 67 | 130 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi09g00310 | 229 | ProSiteProfiles | AP2/ERF domain profile. | 67 | 124 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi09g00310 | 229 | Coils | Coil | 145 | 165 | - | - | |
Lsi09g00310 | 229 | MobiDBLite | consensus disorder prediction | 155 | 170 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi05g01266 | Lsi-Chr5:20431416 | Lsi09g00310 | Lsi-Chr9:3187047 | 1.19E-70 | dispersed | |
Lsi09g00310 | Lsi-Chr9:3187047 | Lsi09g00596 | Lsi-Chr9:6458757 | 9.98E-66 | dispersed | |
Lsi09g00309 | Lsi-Chr9:3150495 | Lsi09g00310 | Lsi-Chr9:3187047 | 1.27E-35 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
25868 | PF00847 | AP2 | 2.40E-14 | CL0081 | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi09g00310 | - | - | bhj:120092445 | 427.943 |