Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00310 ATGGATTGGTTCGCTCAATTTTCTGATCCTCTTCCTTATTATGCTAATTGTAATTACAAATCGGAATCCTCTTCCACGCTTTCAGACGCCGGAACGCCTCCTCAGACCGTGGCTAACTCCGACGAAGAAGTGATTCTGGCGTCCAACCGCCCAAAGCGACGGGCCGGTCGCCGGATTTTTAAAGAAACCAGGCATCCGGTTTACAGAGGAGTACGTCGGAGGAATAACGACAAATGGGTTTGTGAGGTGAGGGAGCCGAATAAGAAGACGAGGATTTGGCTCGGCACCTACCCAACAGCGGAGATGGCGGCCCGTGCACACGATATAGCGGCACTCGCGTTGAGAGGGAAGTCGGCTTGTCTCAATTTCGCTGACTCTGCTTGGCGATTCCCTATTCCGGCAAGTGATGACCCGTCTGTGATCAGGGCGGCAGCGGCGAGGGCGGCGAATGAGTGTAAGGATGAGGAATGTAATGTGAGTCGGGAAGAGGACGACGGTGTTTCTGGTCAGCCGACGGCGGACCCTGAACGACCGGTTTATATCGACGATGAGGCTCTGTCGAATATGCCGATGTTGCTTGCCAGCTTGGCGGAAGGACTTCTTCTCTCTCCTCCATCTTTTTGTGTCAATGATGACGTGGAGTGGGATGATGTGGCAATGAGTGATGATGTGTCATTGTGGAGCTTTTAG 690 52.9 MDWFAQFSDPLPYYANCNYKSESSSTLSDAGTPPQTVANSDEEVILASNRPKRRAGRRIFKETRHPVYRGVRRRNNDKWVCEVREPNKKTRIWLGTYPTAEMAARAHDIAALALRGKSACLNFADSAWRFPIPASDDPSVIRAAAARAANECKDEECNVSREEDDGVSGQPTADPERPVYIDDEALSNMPMLLASLAEGLLLSPPSFCVNDDVEWDDVAMSDDVSLWSF 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3187047 3187736 + Lsi09G003100.1 Lsi09g00310 669923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00310 229 PRINTS Ethylene responsive element binding protein signature 90 106 IPR001471 GO:0003700|GO:0006355
Lsi09g00310 229 PRINTS Ethylene responsive element binding protein signature 68 79 IPR001471 GO:0003700|GO:0006355
Lsi09g00310 229 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1F 1 229 - -
Lsi09g00310 229 SUPERFAMILY DNA-binding domain 67 126 IPR016177 GO:0003677
Lsi09g00310 229 MobiDBLite consensus disorder prediction 155 178 - -
Lsi09g00310 229 CDD AP2 68 126 IPR001471 GO:0003700|GO:0006355
Lsi09g00310 229 Pfam AP2 domain 66 116 IPR001471 GO:0003700|GO:0006355
Lsi09g00310 229 Gene3D AP2/ERF domain 67 125 IPR036955 GO:0003700|GO:0006355
Lsi09g00310 229 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 1 229 IPR045277 GO:0003700
Lsi09g00310 229 SMART rav1_2 67 130 IPR001471 GO:0003700|GO:0006355
Lsi09g00310 229 ProSiteProfiles AP2/ERF domain profile. 67 124 IPR001471 GO:0003700|GO:0006355
Lsi09g00310 229 Coils Coil 145 165 - -
Lsi09g00310 229 MobiDBLite consensus disorder prediction 155 170 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01266 Lsi-Chr5:20431416 Lsi09g00310 Lsi-Chr9:3187047 1.19E-70 dispersed
Lsi09g00310 Lsi-Chr9:3187047 Lsi09g00596 Lsi-Chr9:6458757 9.98E-66 dispersed
Lsi09g00309 Lsi-Chr9:3150495 Lsi09g00310 Lsi-Chr9:3187047 1.27E-35 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25868 PF00847 AP2 2.40E-14 CL0081 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00310 - - bhj:120092445 427.943