Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00314 ATGAGAGGAACTAAGCGCTCTGCCTTATCAGACTCGATTCCCGACACTTACGATTCTGTGCTTGGTAACAAAAGAATATTGGCGGGATCCTCATTTGATATTCAGAGGGCAGAACCATCTCAACAACAGAAGACAAAAACACCTACACTTGATGTGCGCCGGGCGGAGTCATCTCAGCAGCATGTGAGAGCACTTAACACTCAATTCGCAAGTTGGGTGCAGTCACAATTAGCCAATCATCCAGATGAACTTTGGGAAGATGGTATCCGTGATTACTTGACTCATGCCTCAAGTATTATGGAAAAATTTAGTGATATTGTCGAGTGGCTCAAAGCAAATGCTGTTAAAGGAGAAAGTTCACCTTCTACTGGATCTCCTACAGCTGAAAAGAAAACAGAAATTGAACGCAAGAATACTGATGTAAAACTATTTCAAGGACAAACTGGTTTTGCACCTACTAGTGCAACTACGAGCGTTGCAACTTCATGGACCTCTGGAGCATTCTTCAACCATCAAGCCCCTAGCATATTTGGATTACAAAATTCAGTTCCTGCCAATGGTTTTTCTGTTGGTCAAACTGCAGTCCCAACTTCAGAGAATGTGGATGACGAAAATGACTTGGAGCAGCCAAGCAGCCCATCGGTAAAAAAGTCTGAAGAGAAAGGGGTGGTTGTAGTGCATGAAGTTAAGTGCAAGCTTTATGTGAAGTCAACTGATCCAGCAGATAAAGATGCTTGGAAAGACAAAGGCACAGGGCAGCTTTCCTTAAAATGCAAGGAGGGTATCAGCAAGGGTACAAAGGAATCCAAACCAACAATTGTAATCCGAAATGATGTGGGGAGACTGCTCCTGAATGCTTTAATCTATCCAGGGATCAAAACAAGTACTCAAAAGAATTCCCTTGTTGCAATATTCCATACTTCGAGTGAAGGCGATACAAACGATAATGGCAATAAAGATACAGTCGTGGCACGCACGTACTTGATTCGATTAAAAACAGAGGACGATCGGAATAAGCTTGCGACAGCAATTCAAGAATGCGCTCCCGCTCCTTGA 1056 43.09 MRGTKRSALSDSIPDTYDSVLGNKRILAGSSFDIQRAEPSQQQKTKTPTLDVRRAESSQQHVRALNTQFASWVQSQLANHPDELWEDGIRDYLTHASSIMEKFSDIVEWLKANAVKGESSPSTGSPTAEKKTEIERKNTDVKLFQGQTGFAPTSATTSVATSWTSGAFFNHQAPSIFGLQNSVPANGFSVGQTAVPTSENVDDENDLEQPSSPSVKKSEEKGVVVVHEVKCKLYVKSTDPADKDAWKDKGTGQLSLKCKEGISKGTKESKPTIVIRNDVGRLLLNALIYPGIKTSTQKNSLVAIFHTSSEGDTNDNGNKDTVVARTYLIRLKTEDDRNKLATAIQECAPAP 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3224786 3231494 + Lsi09G003140.1 Lsi09g00314 669927

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00314 351 Pfam RanBP1 domain 215 348 IPR000156 GO:0046907
Lsi09g00314 351 MobiDBLite consensus disorder prediction 190 220 - -
Lsi09g00314 351 CDD RanBD_NUP50 219 348 - -
Lsi09g00314 351 ProSiteProfiles Ran binding domain type 1 profile. 217 351 IPR000156 GO:0046907
Lsi09g00314 351 MobiDBLite consensus disorder prediction 115 137 - -
Lsi09g00314 351 SUPERFAMILY PH domain-like 217 349 - -
Lsi09g00314 351 PANTHER RAN BINDING PROTEIN 17 350 IPR045255 -
Lsi09g00314 351 Gene3D - 111 350 IPR011993 -
Lsi09g00314 351 PANTHER NUCLEAR PORE COMPLEX PROTEIN NUP50 17 350 - -
Lsi09g00314 351 SMART ranbd_3 207 347 IPR000156 GO:0046907
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00314 K14295 NUP50, NPAP60; nuclear pore complex protein Nup50 - csv:101205107 616.69
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g406 Blo02g01094 . . Bda08g00534 Bpe05g00626 . . . . . . Cma15g01194 . Car15g01082 . . . . . . . . . . . . . . . . . Cone8ag0333 Cone12ag0330 . . . Csa05g00328 Chy09g01181 . . . . . . . Bma05g00803 . . . Cmo15g01258 . . . . . Cpe13g00180 Bhi12g00197 . . . . . . Cla01g00305 Cam01g0317 Cec01g0307 Cco01g0324 Clacu01g0318 Cmu01g0303 Cre09g2206 Lsi09g00314 . . Cme09g01714
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006692 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 0 1 1 5 4 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00314 Lsi_Chr09 FPKM 2.938947 5.562015 3.790581 6.091867 14.531606 12.816428 12.500188 4.301099 4.532379 4.436593