Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00317 ATGCAGTCTCCTTGTATTAGAGAGGCTTCACAGGCCTGCCTTCGAGGCTGCTGTCGAACCCCGTTTCTTGGTCTTACTGATTCTTCACAGACTGCATTTTACAGGTCTTCTGCAGCTTCAACTCCTGCATACAATTTTCATGGAGCAACAGAGATGTCTCTTCATCCGAATGCTCAATTCTCCAACCATGAATCCATCCCTTCTCTAAAGGATGCGTTTACTTACTTTGTTAGAGCATACCCTCTGTACCCTGACACACAACAGATCGATGGAATCCGAGCTGATGAATATAATCATCTTGATCTCTCCAAACACGTTTGTCTTGATTACAATGGTCAGTGTCTCTTTTCCTATGCTCAACAGCAGAGTTCTCCATTGGCTCCAGCTGCTTCTTCTTCTTCTCCATCAGGTTCCCCTCCTCTAATTATGCATTCCCCGGGATCACCATTCTTCAACATTTCCCATAAAGCAGTCAAACCAAATCCCCAGGTGAATGGTGGTCAAGAATCAGAATTTGAGTCCAAAATCAGAAGTAGAATTATGAAGTTTATGAACTTATCAGAAGATGATTATGCTATGGTGTTCACAGCCAATCAATCATCAGCCTTCAAACTTCTAGCAGACACTTACCCTTTTCAGCACAACAGAAATTTGGTCACAGTTTATGATCACAAGAGTGAAGCAGTTGAATTGATGGTTGAAAGCTCCAAGCGGAAAGGAGCAAGAATCAGCTCCGCTGAGTTCTTATGGCCAAACCTAAACATCTCCACTGGAAAATTAAGAAGACTAATCGTCAGTAAACAAAAGAGGAAGAAGAAGATGAAGATGAAGAAAAGGGGGCTATTTGTTTTCCCACTTCAGTCAAGATTAACAGGAACTCCATATTCATATCAATGGCTGAACATAGCTCGGGAAAATGAGTGGGATGTCTGCCTAGATACATGTGCATTGGGGCCAAAAGACATGGAAACTTTAGGCCTCTCTCTCTTCAAGCCTGAATTTCTAATTTCTTCTTTCTACAAAGTTTTTGGCGAAAACCCATCAGGGTTTGGCTGTTTGTTCATCAAGAAATCCAATGTTTCATTCCTGGAGAGTTTAATCACCTCACCTGCAAACATTGGCGTTATAAGCCTTATCTCAACATCACCATCATTTCCATTTTCAGAAGAACCAGAAACTCAACAGATTTCAAAACCCAGCCTAGGAATTCGAAATCTAGCTATACCAGAGTCGCGAAATTCACCTGAAATCATGGAAGCCACAGAAATCGAAGAGGAAGAACTCTCATTCACAGGAATCGTCGAATTGAGTACACCCTTTGAATCCACTCGATCAACAAACACAGAAATGAACTCAAAGCTGGATTGCAGAGGCTTAGATCACGCAGATTCAGTAGGTCTAAGACTGATAAGCATTAGAGGAAGATACCTGATCAATTGGCTCACAAATGCATTGATGAATCTTCAACACCCAAATCCAGAAGGAGGAATTGCTAAAGCCCTAGTGAGAATCTACGGCCCCAAAATCGAAATTAATCGAGGACCCGCCGTGGCATTCAACGTATTCGACTGGAAAGGGGAAAAAGTAGACCCAGCAATGGTTCAGAAGCTCGCCGATCGGAGCAATATCTCGTTCAGCAATGGAATTTTGAAGGAGGTAAGTTTCTCGGACAAGAACGAAGAGGAAAATGAGATGAGAAAGGAGAGAGCGGCGGAGGAAGGAGAAAGAATGGATAGAAGTGAGAAACGGCATTGTTGGATATCGGTGGTGAGTGCAGGGATTGGATTTTTGACAAATTTTGAAGATGTTTATAGGGTTTGGGCGTTTGTTTCCAGGTTTTTGGATGCAGATTTTGTGGAGAAAGAGAGATGGAGATATATGGCTCTTAATCAAAAGACCATTGTAGTTTGA 1911 42.23 MQSPCIREASQACLRGCCRTPFLGLTDSSQTAFYRSSAASTPAYNFHGATEMSLHPNAQFSNHESIPSLKDAFTYFVRAYPLYPDTQQIDGIRADEYNHLDLSKHVCLDYNGQCLFSYAQQQSSPLAPAASSSSPSGSPPLIMHSPGSPFFNISHKAVKPNPQVNGGQESEFESKIRSRIMKFMNLSEDDYAMVFTANQSSAFKLLADTYPFQHNRNLVTVYDHKSEAVELMVESSKRKGARISSAEFLWPNLNISTGKLRRLIVSKQKRKKKMKMKKRGLFVFPLQSRLTGTPYSYQWLNIARENEWDVCLDTCALGPKDMETLGLSLFKPEFLISSFYKVFGENPSGFGCLFIKKSNVSFLESLITSPANIGVISLISTSPSFPFSEEPETQQISKPSLGIRNLAIPESRNSPEIMEATEIEEEELSFTGIVELSTPFESTRSTNTEMNSKLDCRGLDHADSVGLRLISIRGRYLINWLTNALMNLQHPNPEGGIAKALVRIYGPKIEINRGPAVAFNVFDWKGEKVDPAMVQKLADRSNISFSNGILKEVSFSDKNEEENEMRKERAAEEGERMDRSEKRHCWISVVSAGIGFLTNFEDVYRVWAFVSRFLDADFVEKERWRYMALNQKTIVV 636
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3283032 3284942 + Lsi09G003170.1 Lsi09g00317 669930

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00317 636 Gene3D Aspartate Aminotransferase, domain 1 440 622 IPR015422 GO:0003824
Lsi09g00317 636 Gene3D - 156 378 IPR015421 GO:0003824
Lsi09g00317 636 PANTHER MOLYBDOPTERIN COFACTOR SULFURASE MOSC 3 635 - -
Lsi09g00317 636 SUPERFAMILY PLP-dependent transferases 173 369 IPR015424 -
Lsi09g00317 636 PANTHER MOLYBDENUM COFACTOR SULFURASE-LIKE PROTEIN 3 635 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00317 - - - csv:101220052 1093.57
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g00317 Lsi-Chr9:3283032 Lsi09g00566 Lsi-Chr9:6080144 0 dispersed
Lsi09g00317 Lsi-Chr9:3283032 Lsi04g01604 Lsi-Chr4:23551549 8.53E-31 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g414 . . . . . . . . . . Cma02g01490 . Car02g01248 . . . Cpe05g00301 . . . . . . . . . . . . . . . . . Cone15ag0129 . Csa05g00332 Chy09g01177 . . . . . . . . . . Cmo02g01529 . . . . . . . Bhi12g00186 . . Lac11g2149 Hepe06g1593 . Lcy12g1710 Cla01g00309 Cam01g0321 Cec01g0312 Cco01g0329 Clacu01g0322 Cmu01g0307 . Lsi09g00317 . . Cme09g01710
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013740 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 2 1 0 25
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00317 Lsi_Chr09 FPKM 0.0 0.0 1.994608 0.926413 0.0 0.0 0.471127 1.559592 0.974892 1.113048